An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags (Q33569286)

28 July 2017

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags (English)

1 reference

28 July 2017

Jean-Francois Baroiller

object named as

Jean-Francois Baroiller

6

0 references

Thomas D Kocher

object named as

Thomas D Kocher

9

0 references

Karen L Carleton

8

object named as

Karen L Carleton

1 reference

28 July 2017

4

Helena D'Cotta

1 reference

28 July 2017

Bo-Young Lee

1

1 reference

28 July 2017

Aimee E Howe

2

1 reference

28 July 2017

Matthew A Conte

3

1 reference

28 July 2017

Elodie Pepey

5

1 reference

28 July 2017

Federica di Palma

7

1 reference

28 July 2017

language of work or name

English

0 references

publication date

30 April 2010

1 reference

28 July 2017

1 reference

28 July 2017

11

1 reference

28 July 2017

278

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-278

28 July 2017

0 references

cites work

Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

KAAS: an automatic genome annotation and pathway reconstruction server

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

A second-generation genetic linkage map of tilapia (Oreochromis spp.).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Rapid hyperosmotic coinduction of two tilapia (Oreochromis mossambicus) transcription factors in gill cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Bacterial lipopolysaccharide (LPS) modulates corticotropin-releasing hormone (CRH) content and release in the brain of juvenile and adult tilapia (Oreochromis mossambicus; Teleostei).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Comparison of the cytotoxicity induced by different exposure to sodium arsenite in two fish cell lines

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Adaptive evolution and explosive speciation: the cichlid fish model

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

EST-based identification of genes expressed in the hypothalamus of adult tilapia, Oreochromis mossambicus.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Identification of low-abundance differentially expressed transcripts using arrayed cDNA clones

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

The generic genome browser: a building block for a model organism system database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Low amplification and fast visual pigment phosphorylation as mechanisms characterizing cone photoresponses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Culture of the 'aquatic chicken': present concerns and future prospects.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

CAP3: A DNA sequence assembly program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

A magnetic attraction to high-throughput genomics.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Normalization and subtraction: two approaches to facilitate gene discovery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Solid-phase reversible immobilization for the isolation of PCR products

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Transcriptional responses of the black-chinned tilapia Sarotherodon melanotheron to salinity extremes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Linking the genomes of nonmodel teleosts through comparative genomics.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Influence of temperature on the ontogenetic expression of neural development-related genes from developing tilapia brain expressed sequence tags.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

A BAC-based physical map of the Nile tilapia genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Ontogeny of corticotropin-releasing factor and of hypothalamic-pituitary-interrenal axis responsiveness to stress in tilapia (Oreochromis mossambicus; Teleostei).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Cold-stress induced the modulation of catecholamines, cortisol, immunoglobulin M, and leukocyte phagocytosis in tilapia

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

The use of the oxidative stress responses as biomarkers in Nile tilapia (Oreochromis niloticus) exposed to in vivo cadmium contamination

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

BLAT—The BLAST-Like Alignment Tool

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

DNA sequence quality trimming and vector removal.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Combined effects of 2,4-D and azinphosmethyl on antioxidant enzymes and lipid peroxidation in liver of Oreochromis niloticus.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Construction and characterization of a normalized cDNA library

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2874815

Extensive analysis of ORF sequences from two different cichlid species in Lake Victoria provides molecular evidence for a recent radiation event of the Victoria species flock: identity of EST sequences between Haplochromis chilotes and Haplochromis

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20433739

12 December 2020

inferred from PubMed ID database lookup

Genome-scan analysis for quantitative trait loci in an F2 tilapia hybrid

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20433739

12 December 2020

inferred from PubMed ID database lookup

Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20433739

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-11-278

1 reference

Dimensions Publication ID

28 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-278

release_civ4lp4ywfdvfg4rf4v7biw3ju

9 September 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/civ4lp4ywfdvfg4rf4v7biw3ju

24 November 2022

mapped directly with Wikidata item

PMCID

2874815

1 reference

reason for deprecated rank

28 July 2017

incorrect identifier value

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/civ4lp4ywfdvfg4rf4v7biw3ju

9 June 2023

mapped directly with Wikidata item

1 reference

reason for deprecated rank

28 July 2017

incorrect identifier value

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/civ4lp4ywfdvfg4rf4v7biw3ju

9 June 2023