Stretched DNA investigated using molecular-dynamics and quantum-mechanical calculations. (Q33568290)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20074515%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Stretched DNA investigated using molecular-dynamics and quantum-mechanical calculations (English)

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16 January 2020

1

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16 January 2020

Pavel Hobza

series ordinal

2

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16 January 2020

Sarah A Harris

series ordinal

3

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16 January 2020

author name string

Jan Rezác

series ordinal

1

1 reference

PubMed ID

20074515

28 July 2017

language of work or name

English

0 references

publication date

1 January 2010

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16 January 2020

number of pages

10

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inferred from page(s)

published in

Biophysical Journal

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16 January 2020

volume

98

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16 January 2020

issue

1

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16 January 2020

page(s)

101-110

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20074515%20AND%20SRC:MED&resulttype=core&format=json

In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

16 January 2020

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Molecular force balance measurements reveal that double-stranded DNA unbinds under force in rate-dependent pathways

21 June 2018

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Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.

21 June 2018

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Alpha/gamma transitions in the B-DNA backbone

21 June 2018

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Force spectroscopy of single DNA and RNA molecules

21 June 2018

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Temperature dependence of unbinding forces between complementary DNA strands

21 June 2018

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Cooperativity in drug-DNA recognition: a molecular dynamics study

21 June 2018

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Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

21 June 2018

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Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching

21 June 2018

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Force-induced melting of the DNA double helix. 2. Effect of solution conditions

21 June 2018

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Force-induced melting of the DNA double helix 1. Thermodynamic analysis

21 June 2018

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Replication by a single DNA polymerase of a stretched single-stranded DNA

21 June 2018

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Model energy landscapes and the force-induced dissociation of ligand-receptor bonds

21 June 2018

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Mechanical stability of single DNA molecules

21 June 2018

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Dynamic force spectroscopy of single DNA molecules

21 June 2018

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Polymerization and mechanical properties of single RecA-DNA filaments

21 June 2018

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21 June 2018

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Modelling extreme stretching of DNA.

21 June 2018

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Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

21 June 2018

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The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

21 June 2018

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Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared withab initioquantum mechanics calculations

21 June 2018

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On the nature of DNA-duplex stability.

31 October 2018

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Kinking occurs during molecular dynamics simulations of small DNA minicircles.

31 October 2018

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31 October 2018

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True stabilization energies for the optimal planar hydrogen-bonded and stacked structures of guanine...cytosine, adenine...thymine, and their 9- and 1-methyl derivatives: complete basis set calculations at the MP2 and CCSD(T) levels and comparison w

31 October 2018

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Single-molecule analysis of DNA uncoiling by a type II topoisomerase.

31 October 2018

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Force and velocity measured for single molecules of RNA polymerase.

31 October 2018

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31 October 2018

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A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

31 October 2018

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12 December 2020

Structure, force, and energy of a double-stranded DNA oligonucleotide under tensile loads

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12 December 2020

Modelling DNA stretching for physics and biology

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12 December 2020

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12 December 2020

Accurate Interaction Energies of Hydrogen-Bonded Nucleic Acid Base Pairs

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12 December 2020

Force-induced melting of a short DNA double helix

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12 December 2020

Atomistic simulation of the DNA helix-coil transition

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12 December 2020

Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs

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12 December 2020

10.1016/J.BPJ.2009.08.062

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16 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20074515%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

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