Comparison of database search strategies for high precursor mass accuracy MS/MS data (Q33516649)

27 July 2017

Comparison of database search strategies for high precursor mass accuracy MS/MS data (English)

1 reference

27 July 2017

0 references

4

Michael J MacCoss

1 reference

27 July 2017

Edward J Hsieh

1

1 reference

PubMed ID

19938873

27 July 2017

Michael R Hoopmann

series ordinal

2

1 reference

PubMed ID

19938873

27 July 2017

Brendan MacLean

series ordinal

3

1 reference

27 July 2017

1 February 2010

1 reference

Journal of Proteome Research

27 July 2017

1 reference

27 July 2017

9

1 reference

27 July 2017

2

1 reference

27 July 2017

1138-1143

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

27 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Precursor-ion mass re-estimation improves peptide identification on hybrid instruments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Postexperiment monoisotopic mass filtering and refinement (PE-MMR) of tandem mass spectrometric data increases accuracy of peptide identification in LC/MS/MS.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Informatics for peptide retention properties in proteomic LC-MS.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Effects of modified digestion schemes on the identification of proteins from complex mixtures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

The use of a hybrid linear trap/FT-ICR mass spectrometer for on-line high resolution/high mass accuracy bottom-up sequencing.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Open mass spectrometry search algorithm

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

TANDEM: matching proteins with tandem mass spectra

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Protein sequencing by tandem mass spectrometry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2818881

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19938873

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR900816A

1 reference

27 July 2017

1 reference

27 July 2017

1 reference

PubMed ID

19938873