Strategies for analyzing highly enriched IP-chip datasets (Q33505850)

27 July 2017

Strategies for analyzing highly enriched IP-chip datasets (English)

1 reference

27 July 2017

1 reference

Oscar M Aparicio

3

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author name string

Simon R V Knott

series ordinal

1

1 reference

PubMed ID

19772646

27 July 2017

Christopher J Viggiani

series ordinal

2

1 reference

PubMed ID

19772646

27 July 2017

Simon Tavaré

series ordinal

4

1 reference

27 July 2017

22 September 2009

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27 July 2017

1 reference

27 July 2017

10

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27 July 2017

305

1 reference

Creative Commons Attribution 2.0 Generic

27 July 2017

start time

22 September 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-10-305

0 references

cites work

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

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Global reorganization of replication domains during embryonic stem cell differentiation

21 June 2018

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Rad53 regulates replication fork restart after DNA damage in Saccharomyces cerevisiae.

21 June 2018

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CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure

21 June 2018

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A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments

21 June 2018

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Top1- and Top2-mediated topological transitions at replication forks ensure fork progression and stability and prevent DNA damage checkpoint activation

21 June 2018

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Replication in hydroxyurea: it's a matter of time

21 June 2018

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Normalization and experimental design for ChIP-chip data

21 June 2018

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Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

21 June 2018

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Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

21 June 2018

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OriDB: a DNA replication origin database

21 June 2018

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High-resolution computational models of genome binding events.

21 June 2018

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Model-based analysis of tiling-arrays for ChIP-chip.

21 June 2018

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

21 June 2018

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High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome

21 June 2018

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ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data

21 June 2018

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Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization

21 June 2018

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Genome-wide map of nucleosome acetylation and methylation in yeast

21 June 2018

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A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences

21 June 2018

1 reference

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Temporal profile of replication of human chromosomes

21 June 2018

1 reference

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Transcriptional regulatory code of a eukaryotic genome

21 June 2018

1 reference

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The Rpd3-Sin3 histone deacetylase regulates replication timing and enables intra-S origin control in Saccharomyces cerevisiae

21 June 2018

1 reference

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Normalization of cDNA microarray data

21 June 2018

1 reference

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S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

Transcriptional regulatory networks in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases

21 June 2018

1 reference

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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

21 June 2018

1 reference

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A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication

21 June 2018

1 reference

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

Coordination of replication and transcription along a Drosophila chromosome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

Mapping of early firing origins on a replication profile of budding yeast

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

Replication dynamics of the yeast genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2759964

31 October 2018

Identifiers

DOI

10.1186/1471-2105-10-305

1 reference

journals/bmcbi/KnottVAT09

27 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference

PubMed ID

19772646