Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb (Q33503926)

27 July 2017

Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb (English)

1 reference

Dietrich Rebholz-Schuhmann

27 July 2017

series ordinal

3

object named as

Dietrich Rebholz-Schuhmann

1 reference

27 July 2017

Kevin Nagel

1

1 reference

PubMed ID

19758468

27 July 2017

Antonio Jimeno-Yepes

series ordinal

2

1 reference

PubMed ID

19758468

27 July 2017

language of work or name

English

0 references

publication date

27 August 2009

1 reference

27 July 2017

1 reference

27 July 2017

10 Suppl 8

1 reference

27 July 2017

S4

1 reference

Creative Commons Attribution 2.0 Generic

27 July 2017

S8

0 references

copyright license

start time

1 August 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-10-s8-s4

0 references

cites work

Combining evidence, specificity, and proximity towards the normalization of Gene Ontology terms in text

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Normalizing biomedical terms by minimizing ambiguity and variability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Towards a systematic evaluation of protein mutation extraction systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

A workflow for mutation extraction and structure annotation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Database resources of the National Center for Biotechnology Information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Text processing through Web services: calling Whatizit

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Automatic generation of 3D motifs for classification of protein binding sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Clustering protein environments for function prediction: finding PROSITE motifs in 3D

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Automatic extraction of protein point mutations using a graph bigram association.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

The Universal Protein Resource (UniProt): an expanding universe of protein information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Evaluation of BioCreAtIvE assessment of task 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Automatic extraction of mutations from Medline and cross-validation with OMIM.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

A model for statistical significance of local similarities in structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

TMPDB: a database of experimentally-characterized transmembrane topologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Data mining the protein data bank: residue interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Automatic extraction of biological information from scientific text: protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Retrieving mutation-specific information for human proteins in UniProt/Swiss-Prot Knowledgebase.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Automated discovery of 3D motifs for protein function annotation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

DOLOP--database of bacterial lipoproteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

Mining literature for protein-protein interactions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2745586

A shallow parser based on closed-class words to capture relations in biomedical text

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19758468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Predicting the sub-cellular location of proteins from text using support vector machines

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19758468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-10-S8-S4

1 reference

27 July 2017

journals/bmcbi/NagelJR09

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference

PubMed ID

19758468