Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1 (Q33493425)

27 July 2017

Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1 (English)

1 reference

Ruminococcus flavefaciens

27 July 2017

1 reference

Ruminococcus flavefaciens

1 reference

inferred from title

author

Margret E Berg Miller

Margret E Berg Miller

1

0 references

Bernard Henrissat

9

Bernard Henrissat

1 reference

27 July 2017

Pedro Maldonado Coutinho

10

Pedro M Coutinho

1 reference

27 July 2017

0 references

Dionysios A Antonopoulos

2

1 reference

27 July 2017

Marco T Rincon

3

1 reference

27 July 2017

Mark Band

4

1 reference

27 July 2017

Albert Bari

5

1 reference

27 July 2017

Tatsiana Akraiko

6

1 reference

27 July 2017

Alvaro Hernandez

7

1 reference

27 July 2017

Jyothi Thimmapuram

8

1 reference

27 July 2017

Ilya Borovok

11

1 reference

27 July 2017

Sadanari Jindou

12

1 reference

27 July 2017

Raphael Lamed

13

1 reference

27 July 2017

Harry J Flint

14

1 reference

27 July 2017

Edward A Bayer

15

1 reference

27 July 2017

Bryan A White

16

1 reference

27 July 2017

language of work or name

English

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publication date

14 August 2009

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27 July 2017

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27 July 2017

4

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27 July 2017

8

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27 July 2017

e6650

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

start time

14 August 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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21 June 2018

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Functional subgenomics of Clostridium thermocellum cellulosomal genes: identification of the major catalytic components in the extracellular complex and detection of three new enzymes

21 June 2018

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Expression of 17 genes in Clostridium thermocellum ATCC 27405 during fermentation of cellulose or cellobiose in continuous culture

21 June 2018

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ScaC, an adaptor protein carrying a novel cohesin that expands the dockerin-binding repertoire of the Ruminococcus flavefaciens 17 cellulosome.

21 June 2018

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Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization

21 June 2018

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21 June 2018

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Ruminococcus albus 8 mutants defective in cellulose degradation are deficient in two processive endocellulases, Cel48A and Cel9B, both of which possess a novel modular architecture

21 June 2018

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Characteristics of ruminal anaerobic celluloytic cocci and Cillobacterium cellulosolvens n. sp.

21 June 2018

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Maturation of lipoproteins by type II signal peptidase is required for phagosomal escape of Listeria monocytogenes

21 June 2018

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Microarray transcription analysis of clinical Staphylococcus aureus isolates resistant to vancomycin

21 June 2018

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Regulation of the Cellulosomal celS ( cel48A ) Gene of Clostridium thermocellum Is Growth Rate Dependent

21 June 2018

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Novel organization and divergent dockerin specificities in the cellulosome system of Ruminococcus flavefaciens.

21 June 2018

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Degradation of cellulose substrates by cellulosome chimeras. Substrate targeting versus proximity of enzyme components

21 June 2018

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21 June 2018

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EndB, a multidomain family 44 cellulase from Ruminococcus flavefaciens 17, binds to cellulose via a novel cellulose-binding module and to another R. flavefaciens protein via a dockerin domain

21 June 2018

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Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens

21 June 2018

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Three multidomain esterases from the cellulolytic rumen anaerobe Ruminococcus flavefaciens 17 that carry divergent dockerin sequences.

21 June 2018

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Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans

21 June 2018

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Sequence of egV and properties of EgV, a Ruminococcus albus endoglucanase containing a dockerin domain

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

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Microbial gene identification using interpolated Markov models

21 June 2018

1 reference

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Structure and mechanism of endo/exocellulase E4 from Thermomonospora fusca

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Dockerin-like sequences in cellulases and xylanases from the rumen cellulolytic bacterium Ruminococcus flavefaciens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

The processive endocellulase CelF, a major component of the Clostridium cellulolyticum cellulosome: purification and characterization of the recombinant form

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

A bifunctional enzyme, with separate xylanase and beta(1,3-1,4)-glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Nucleotide sequence and transcriptional analysis of the celD beta-glucanase gene from Ruminococcus flavefaciens FD-1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Specialized cell surface structures in cellulolytic bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Purification and characterization of an exo-beta-1,4-glucanase from Ruminococcus flavefaciens FD-1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Molecular cloning of genes from Ruminococcus flavefaciens encoding xylanase and beta(1-3,1-4)glucanase activities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Assessment of the endo-1,4-beta-glucanase components of Ruminococcus flavefaciens FD-1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Nucleotide sequence of the celA gene encoding a cellodextrinase of Ruminococcus flavefaciens FD-1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Cellobiose uptake and metabolism by Ruminococcus flavefaciens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

A bifunctional xylanase encoded by the xynA gene of the rumen cellulolytic bacterium Ruminococcus flavefaciens 17 comprises two dissimilar domains linked by an asparagine/glutamine-rich sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2721979

DNA sequence and transcriptional characterization of a beta-glucanase gene (celB) from Ruminococcus flavefaciens FD-1.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0006650

Action of designer cellulosomes on homogeneous versus complex substrates: controlled incorporation of three distinct enzymes into a defined trifunctional scaffoldin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0006650

Transcriptional regulation of an endoglucanase and a cellodextrinase gene in Ruminococcus flavefaciens FD-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0006650

Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0006650

Characterization of the gene encoding glutamate dehydrogenase ( gdhA) from the ruminal bacterium Ruminococcus flavefaciens FD-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0006650

Volatile fatty acid growth factor for cellulolytic cocci of bovine rumen.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0006650

The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects

21 January 2018

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12 December 2020

Characterization of the cellulolytic complex (cellulosome) from Ruminococcus albus

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DNA micro-array-based identification of bile-responsive genes in Lactobacillus plantarum

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12 December 2020

Impact of the regulatory loci agr, sarA and sae of Staphylococcus aureus on the induction of alpha-toxin during device-related infection resolved by direct quantitative transcript analysis

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12 December 2020

On Ruminococcus flavefaciens, a cellulose-decomposing bacterium from the rumen of sheep and cattle

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12 December 2020

Using the FASTA Program to Search Protein and DNA Sequence Databases

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12 December 2020

Phylogenetic reconstruction of Gram-positive organisms based on comparative sequence analysis of molecular chaperones from the ruminal microorganism Ruminococcus flavefaciens FD-1

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12 December 2020

Interactions of microbial populations in cellulose fermentation

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0006650

Identifiers

DOI

1 reference

27 July 2017

0 references

1 reference

27 July 2017

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