Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation (Q33485007)

27 July 2017

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation (English)

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27 July 2017

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Paul W Sternberg

5

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Kimberly Van Auken

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1

object named as

Kimberly Van Auken

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27 July 2017

Joshua Jaffery

2

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PubMed ID

19622167

27 July 2017

Juancarlos Chan

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3

1 reference

PubMed ID

19622167

27 July 2017

Hans-Michael Müller

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4

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27 July 2017

21 July 2009

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27 July 2017

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27 July 2017

10

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27 July 2017

228

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https://scigraph.springernature.com/pub.10.1186/1471-2105-10-228

27 July 2017

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cites work

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Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

21 June 2018

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Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae

21 June 2018

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Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers

21 June 2018

1 reference

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Integrating protein-protein interactions and text mining for protein function prediction

21 June 2018

1 reference

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Genomic-bioinformatic analysis of transcripts enriched in the third-stage larva of the parasitic nematode Ascaris suum

21 June 2018

1 reference

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Discovering gene annotations in biomedical text databases

21 June 2018

1 reference

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InterPro and InterProScan: tools for protein sequence classification and comparison

21 June 2018

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21 June 2018

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Mining experimental evidence of molecular function claims from the literature.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Manual curation is not sufficient for annotation of genomic databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

GOAnnotator: linking protein GO annotations to evidence text

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Automated recognition of malignancy mentions in biomedical literature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Caenorhabditis elegans UNC-96 is a new component of M-lines that interacts with UNC-98 and paramyosin and is required in adult muscle for assembly and/or maintenance of thick filaments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Identifying gene and protein mentions in text using conditional random fields

21 June 2018

1 reference

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Evaluation of BioCreAtIvE assessment of task 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Centriole assembly requires both centriolar and pericentriolar material proteins

21 June 2018

1 reference

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Biomedical named entity recognition using two-phase model based on SVMs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Automatic extraction of gene/protein biological functions from biomedical text

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Textpresso: an ontology-based information retrieval and extraction system for biological literature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

MeKE: discovering the functions of gene products from biomedical literature via sentence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

Basolateral localization of the Caenorhabditis elegans epidermal growth factor receptor in epithelial cells by the PDZ protein LIN-10.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

The Caenorhabditis elegans LIN-26 protein is required to specify and/or maintain all non-neuronal ectodermal cell fates.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719631

31 October 2018

Identifiers

DOI

10.1186/1471-2105-10-228

1 reference

journals/bmcbi/AukenJCMS09

27 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference

PubMed ID

19622167