Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension (Q33434946)

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English	Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension	scientific article

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scholarly article

1 reference

Europe PubMed Central

26 July 2017

Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension (English)

1 reference

Europe PubMed Central

26 July 2017

Caenorhabditis elegans

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1 reference

based on heuristic

inferred from title

author name string

Chen Li

1

1 reference

Europe PubMed Central

26 July 2017

Masao Nagasaki

2

1 reference

Europe PubMed Central

26 July 2017

Kazuko Ueno

3

1 reference

Europe PubMed Central

26 July 2017

Satoru Miyano

4

1 reference

Europe PubMed Central

26 July 2017

publication date

27 April 2009

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Europe PubMed Central

26 July 2017

BMC Systems Biology

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Europe PubMed Central

26 July 2017

3

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Europe PubMed Central

26 July 2017

42

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Europe PubMed Central

26 July 2017

https://scigraph.springernature.com/pub.10.1186/1752-0509-3-42

0 references

Cell system ontology: representation for modeling, visualizing, and simulating biological pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Vulval development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

LIN-12/Notch signaling in C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Petri net modelling of biological networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Predictive modeling of signaling crosstalk during C. elegans vulval development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Genomic Object Net: I. A platform for modelling and simulating biopathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Petri Net representations in systems biology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Model building and model checking for biochemical processes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling

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21 June 2018

Representation and simulation of biochemical processes using the pi-calculus process algebra.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Notch inhibition of RAS signaling through MAP kinase phosphatase LIP-1 during C. elegans vulval development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

MAP kinase signaling specificity mediated by the LIN-1 Ets/LIN-31 WH transcription factor complex during C. elegans vulval induction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

lag-1, a gene required for lin-12 and glp-1 signaling in Caenorhabditis elegans, is homologous to human CBF1 and Drosophila Su(H).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

lin-31, a Caenorhabditis elegans HNF-3/fork head transcription factor homolog, specifies three alternative cell fates in vulval development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

A MAP kinase homolog, mpk-1, is involved in ras-mediated induction of vulval cell fates in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Alterations in cell lineage following laser ablation of cells in the somatic gonad of Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Pattern formation during vulval development in C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

A genetic pathway for the specification of the vulval cell lineages of Caenorhabditis elegans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

The let-60 locus controls the switch between vulval and nonvulval cell fates in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Post-embryonic cell lineages of the nematode, Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

21 June 2018

Temporal logic patterns for querying dynamic models of cellular interaction networks.

1 reference

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31 October 2018

Modelling and simulation of signal transductions in an apoptosis pathway by using timed Petri nets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

The C. elegans homolog of the mammalian tumor suppressor Dep-1/Scc1 inhibits EGFR signaling to regulate binary cell fate decisions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

Constructing biological pathway models with hybrid functional Petri nets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

A versatile petri net based architecture for modeling and simulation of complex biological processes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

Crosstalk between the EGFR and LIN-12/Notch pathways in C. elegans vulval development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

Biopathways representation and simulation on hybrid functional Petri net.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

Boundary formation by notch signaling in Drosophila multicellular systems: experimental observations and gene network modeling by Genomic Object Net.

1 reference

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31 October 2018

Endocytosis-mediated downregulation of LIN-12/Notch upon Ras activation in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

The combined action of two intercellular signaling pathways specifies three cell fates during vulval induction in C. elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691733

31 October 2018

SynMuv genes redundantly inhibit lin-3/EGF expression to prevent inappropriate vulval induction in C. elegans

1 reference

https://pubmed.ncbi.nlm.nih.gov/19393101

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling and simulation with Hybrid Functional Petri Nets of the role of interleukin-6 in human early haematopoiesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19393101

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hybrid Petri net representation of gene regulatory network

1 reference

https://pubmed.ncbi.nlm.nih.gov/19393101

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1752-0509-3-42

1 reference

Europe PubMed Central

26 July 2017

DBLP publication ID

journals/bmcsb/0007NUM09

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DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

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