Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis (Q33432706)

26 July 2017

Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis (English)

1 reference

26 July 2017

1 reference

Qing-Jun Luo

1

1 reference

26 July 2017

Manoj P Samanta

2

1 reference

26 July 2017

Fatih Köksal

3

1 reference

26 July 2017

Jaroslav Janda

4

1 reference

26 July 2017

David W Galbraith

5

1 reference

26 July 2017

Casey R Richardson

6

1 reference

26 July 2017

Fangqian Ou-Yang

7

1 reference

26 July 2017

Christopher D Rock

8

1 reference

26 July 2017

17 April 2009

1 reference

26 July 2017

1 reference

26 July 2017

5

1 reference

26 July 2017

e1000457

1 reference

26 July 2017

4

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

start time

17 April 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageQuant

object named as

ImageQuant TL

2 references

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2664332/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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What do natural antisense transcripts regulate?

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

21 June 2018

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21 June 2018

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Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

21 June 2018

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Evolution of Arabidopsis MIR genes generates novel microRNA classes

21 June 2018

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Degradation of microRNAs by a family of exoribonucleases in Arabidopsis

21 June 2018

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

21 June 2018

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Widespread translational inhibition by plant miRNAs and siRNAs

21 June 2018

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Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

21 June 2018

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Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

21 June 2018

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21 June 2018

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Interaction with host SGS3 is required for suppression of RNA silencing by tomato yellow leaf curl virus V2 protein.

21 June 2018

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Biochemical activities of Arabidopsis RNA-dependent RNA polymerase 6

21 June 2018

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21 June 2018

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Specialization and evolution of endogenous small RNA pathways

21 June 2018

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3' Terminal oligo U-tract-mediated stimulation of decapping

21 June 2018

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Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.

21 June 2018

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Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis.

21 June 2018

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High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

21 June 2018

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Localizing hotspots of antisense transcription

21 June 2018

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

21 June 2018

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RNA polymerase III transcribes human microRNAs

21 June 2018

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A two-hit trigger for siRNA biogenesis in plants

21 June 2018

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Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis

21 June 2018

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SERRATE: a new player on the plant microRNA scene.

21 June 2018

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Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3

21 June 2018

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SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis

21 June 2018

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Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis

21 June 2018

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MicroRNAS and their regulatory roles in plants

21 June 2018

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Post-transcriptional small RNA pathways in plants: mechanisms and regulations

21 June 2018

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AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1

21 June 2018

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HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide

21 June 2018

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

21 June 2018

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Elucidation of the small RNA component of the transcriptome

21 June 2018

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A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis

21 June 2018

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microRNA-directed phasing during trans-acting siRNA biogenesis in plants

21 June 2018

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MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes

21 June 2018

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Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays

21 June 2018

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Methylation as a crucial step in plant microRNA biogenesis

21 June 2018

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siRNA and miRNA: an insight into RISCs

21 June 2018

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Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

21 June 2018

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 June 2018

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Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

21 June 2018

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Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

21 June 2018

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SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis

21 June 2018

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MicroRNA genes are transcribed by RNA polymerase II

21 June 2018

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In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA.

21 June 2018

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Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing

21 June 2018

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Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

21 June 2018

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The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development.

21 June 2018

1 reference

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MicroRNA-directed cleavage of HOXB8 mRNA

21 June 2018

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Spatially restricted microRNA directs leaf polarity through ARGONAUTE1.

21 June 2018

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Empirical analysis of transcriptional activity in the Arabidopsis genome

21 June 2018

1 reference

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Transitivity-dependent and -independent cell-to-cell movement of RNA silencing

21 June 2018

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 June 2018

1 reference

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Gene expression analysis using oligonucleotide arrays produced by maskless photolithography

21 June 2018

1 reference

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Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

21 June 2018

1 reference

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The SGS3 protein involved in PTGS finds a family

21 June 2018

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On the role of RNA amplification in dsRNA-triggered gene silencing

21 June 2018

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Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance

21 June 2018

1 reference

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Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

21 June 2018

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Basic local alignment search tool

21 June 2018

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MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis.

21 June 2018

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A link between RNA metabolism and silencing affecting Arabidopsis development.

21 January 2018

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Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.

21 January 2018

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Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes.

21 January 2018

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Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase

21 January 2018

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A link between mRNA turnover and RNA interference in Arabidopsis.

21 January 2018

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Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.

21 January 2018

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AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

21 January 2018

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Uridine addition after microRNA-directed cleavage

21 January 2018

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The XS domain of a plant specific SGS3 protein adopts a unique RNA recognition motif (RRM) fold.

21 January 2018

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Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis.

21 January 2018

1 reference

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Specific Effects of MicroRNAs on the Plant Transcriptome

21 January 2018

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Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting

21 January 2018

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Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19381263

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1000457

1 reference

26 July 2017

1 reference

26 July 2017

1 reference