Alu exonization events reveal features required for precise recognition of exons by the splicing machinery (Q33415448)

26 July 2017

Alu exonization events reveal features required for precise recognition of exons by the splicing machinery (English)

1 reference

26 July 2017

1

Schraga Schwartz

0 references

Ram Oren

4

object named as

Ram Oren

1 reference

26 July 2017

Nurit Gal-Mark

2

1 reference

26 July 2017

Nir Kfir

3

1 reference

26 July 2017

Eddo Kim

5

1 reference

26 July 2017

Gil Ast

6

1 reference

26 July 2017

language of work or name

1 reference

6 March 2009

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PLOS Computational Biology

26 July 2017

1 reference

26 July 2017

5

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26 July 2017

e1000300

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26 July 2017

3

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Creative Commons Attribution 4.0 International

26 July 2017

start time

6 March 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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The effect of intron length on exon creation ratios during the evolution of mammalian genomes

21 June 2018

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Conserved RNA secondary structures promote alternative splicing

21 June 2018

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Multifactorial interplay controls the splicing profile of Alu-derived exons

21 June 2018

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Alternative splicing of Alu exons--two arms are better than one

21 June 2018

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Alternative splicing: current perspectives

21 June 2018

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Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

21 June 2018

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Pre-mRNA secondary structures influence exon recognition.

21 June 2018

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TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates

21 June 2018

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Global control of aberrant splice-site activation by auxiliary splicing sequences: evidence for a gradient in exon and intron definition

21 June 2018

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Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)

21 June 2018

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Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

21 June 2018

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RNA structure is a key regulatory element in pathological ATM and CFTR pseudoexon inclusion events

21 June 2018

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Evolutionary history of 7SL RNA-derived SINEs in Supraprimates

21 June 2018

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Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes.

21 June 2018

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Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

21 June 2018

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Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

21 June 2018

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

21 June 2018

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A hitchhiker's guide to expressed sequence tag (EST) analysis

21 June 2018

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Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

21 June 2018

1 reference

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Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

21 June 2018

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The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

21 June 2018

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Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes

21 June 2018

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21 June 2018

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21 June 2018

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Determinants of the inherent strength of human 5' splice sites

21 June 2018

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Fast and reliable prediction of noncoding RNAs

21 June 2018

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Systematic identification and analysis of exonic splicing silencers.

21 June 2018

1 reference

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Influence of RNA secondary structure on the pre-mRNA splicing process

21 June 2018

1 reference

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How did alternative splicing evolve?

21 June 2018

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A non-EST-based method for exon-skipping prediction

21 June 2018

1 reference

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Computational definition of sequence motifs governing constitutive exon splicing.

21 June 2018

1 reference

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Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Sequence information for the splicing of human pre-mRNA identified by support vector machine classification

21 June 2018

1 reference

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Widespread selection for local RNA secondary structure in coding regions of bacterial genes

21 June 2018

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ESEfinder: A web resource to identify exonic splicing enhancers

21 June 2018

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Vienna RNA secondary structure server

21 June 2018

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The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

21 June 2018

1 reference

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Mechanisms of alternative pre-messenger RNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

High-affinity hnRNP A1 binding sites and duplex-forming inverted repeats have similar effects on 5' splice site selection in support of a common looping out and repression mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Predictive identification of exonic splicing enhancers in human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Alu-containing exons are alternatively spliced

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Pre-mRNA splicing in the new millennium

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3' splice site and its cis-regulatory element: possible involvement in RNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Regulation of fibronectin EDA exon alternative splicing: possible role of RNA secondary structure for enhancer display.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

A highly stable duplex structure sequesters the 5' splice site region of hnRNP A1 alternative exon 7B.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

hnRNP proteins and the biogenesis of mRNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Exon recognition in vertebrate splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Alternative splicing caused by RNA secondary structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

RNA secondary structure repression of a muscle-specific exon in HeLa cell nuclear extracts.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

5' splice site mutations in tau associated with the inherited dementia FTDP-17 affect a stem-loop structure that regulates alternative splicing of exon 10.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000300

Accurate identification of alternatively spliced exons using support vector machine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000300

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000300

A mutational analysis of the polypyrimidine tract of introns. Effects of sequence differences in pyrimidine tracts on splicing.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639721

Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase?

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000300

Tissue-specific splicing in vivo of the beta-tropomyosin gene: dependence on an RNA secondary structure

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19266014

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000300

1 reference

journals/ploscb/SchwartzGKOKA09

26 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

26 July 2017

1 reference