Cell-type-specific proteome and interactome: using HIV-1 Tat as a test case (Q33347964)

26 July 2017

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title

Cell-type-specific proteome and interactome: using HIV-1 Tat as a test case (English)

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26 July 2017

Kylene Kehn-Hall

2

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Fatah Kashanchi

series ordinal

4

object named as

Fatah Kashanchi

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26 July 2017

Rachel Van Duyne

1

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26 July 2017

Lawrence Carpio

series ordinal

3

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26 July 2017

publication date

1 October 2009

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Expert Review of Proteomics

26 July 2017

published in

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26 July 2017

volume

6

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26 July 2017

issue

5

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26 July 2017

page(s)

515-526

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Cataloguing the HIV type 1 human protein interaction network

26 July 2017

cites work

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Cellular reservoirs of HIV-1 and their role in viral persistence

21 January 2018

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Mononuclear phagocytes of blood and bone marrow: comparative roles as viral reservoirs in human immunodeficiency virus type 1 infections

21 January 2018

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Latent HIV-1 infection in enriched populations of blood monocytes and T cells from seropositive patients

21 January 2018

1 reference

Activation of infectious virus from latent human immunodeficiency virus infection of monocytes in vivo

21 January 2018

1 reference

NeuroAIDS: characteristics and diagnosis of the neurological complications of AIDS.

21 January 2018

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HIV tat and neurotoxicity

21 January 2018

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NeuroAIDS: contributions of the human immunodeficiency virus-1 proteins Tat and gp120 as well as CD40 to microglial activation

21 January 2018

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Soluble CD4 blocks the infectivity of diverse strains of HIV and SIV for T cells and monocytes but not for brain and muscle cells.

21 January 2018

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In macrophages, HIV-1 assembles into an intracellular plasma membrane domain containing the tetraspanins CD81, CD9, and CD53.

21 January 2018

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Productive human immunodeficiency virus type 1 (HIV-1) infection of nonproliferating human monocytes

21 January 2018

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The T cell activation factor NF-ATc positively regulates HIV-1 replication and gene expression in T cells

21 January 2018

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Human T cell transcription factor GATA-3 stimulates HIV-1 expression

21 January 2018

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CCAAT/enhancer binding protein (C/EBP) sites are required for HIV-1 replication in primary macrophages but not CD4(+) T cells.

21 January 2018

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HIV transcriptional activation by the accessory protein, VPR, is mediated by the p300 co-activator

21 January 2018

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Cooperative interaction between HIV-1 regulatory proteins Tat and Vpr modulates transcription of the viral genome

21 January 2018

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HIV-1 Vpr enhances viral burden by facilitating infection of tissue macrophages but not nondividing CD4+ T cells

21 January 2018

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Transcriptional restriction of human immunodeficiency virus type 1 gene expression in undifferentiated primary monocytes

21 January 2018

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Acetylated Tat regulates human immunodeficiency virus type 1 splicing through its interaction with the splicing regulator p32.

21 January 2018

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Tat stimulates cotranscriptional capping of HIV mRNA.

21 January 2018

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The HIV-1 transcriptional activator Tat has potent nucleic acid chaperoning activities in vitro

21 January 2018

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Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing.

21 January 2018

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HIV-1 Tat interaction with Dicer: requirement for RNA

21 January 2018

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The multiple functions of HIV-1 Tat: proliferation versus apoptosis

21 January 2018

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Multiple actions of the human immunodeficiency virus type-1 Tat protein on microglial cell functions

21 January 2018

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TAR-independent activation of the HIV-1 LTR: evidence that tat requires specific regions of the promoter

21 January 2018

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Analysis of arginine-rich peptides from the HIV Tat protein reveals unusual features of RNA-protein recognition

21 January 2018

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Purification of a Tat-associated kinase reveals a TFIIH complex that modulates HIV-1 transcription

21 January 2018

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The HIV transactivator TAT binds to the CDK-activating kinase and activates the phosphorylation of the carboxy-terminal domain of RNA polymerase II

21 January 2018

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Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain

21 January 2018

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A bimolecular mechanism of HIV-1 Tat protein interaction with RNA polymerase II transcription elongation complexes

21 January 2018

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A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA

21 January 2018

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Interactions between Tat and TAR and human immunodeficiency virus replication are facilitated by human cyclin T1 but not cyclins T2a or T2b.

21 January 2018

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Tat modifies the activity of CDK9 to phosphorylate serine 5 of the RNA polymerase II carboxyl-terminal domain during human immunodeficiency virus type 1 transcription

21 January 2018

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Coordination of transcription factor phosphorylation and histone methylation by the P-TEFb kinase during human immunodeficiency virus type 1 transcription

21 January 2018

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7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes

21 January 2018

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MAQ1 and 7SK RNA interact with CDK9/cyclin T complexes in a transcription-dependent manner

21 January 2018

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The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription

21 January 2018

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Inhibition of P-TEFb (CDK9/Cyclin T) kinase and RNA polymerase II transcription by the coordinated actions of HEXIM1 and 7SK snRNA

21 January 2018

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Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4

21 January 2018

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Binding of the 7SK snRNA turns the HEXIM1 protein into a P-TEFb (CDK9/cyclin T) inhibitor

21 January 2018

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Inhibition of Tat activity by the HEXIM1 protein

21 January 2018

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Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription.

21 January 2018

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Identification of multiple cyclin subunits of human P-TEFb

21 January 2018

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P-TEFb, a cyclin-dependent kinase controlling elongation by RNA polymerase II

21 January 2018

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The CDK9-associated cyclins T1 and T2 exert opposite effects on HIV-1 Tat activity

21 January 2018

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The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein

21 January 2018

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Tat gets the "green" light on transcription initiation

21 January 2018

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Direct interaction of human TFIID with the HIV-1 transactivator tat

21 January 2018

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Recruitment of the TATA-binding protein to the HIV-1 promoter is a limiting step for Tat transactivation

21 January 2018

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HIV-1 Tat stimulates transcription complex assembly through recruitment of TBP in the absence of TAFs

21 January 2018

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Human immunodeficiency virus type 1 and 2 Tat proteins specifically interact with RNA polymerase II.

21 January 2018

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Tat-associated kinase (P-TEFb): a component of transcription preinitiation and elongation complexes

21 January 2018

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Acetylation of HIV-1 Tat by CBP/P300 increases transcription of integrated HIV-1 genome and enhances binding to core histones

21 January 2018

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Differential regulation of HIV-1 clade-specific B, C, and E long terminal repeats by NF-kappaB and the Tat transactivator.

21 January 2018

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Chromatin remodeling and modification during HIV-1 Tat-activated transcription

21 January 2018

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21 January 2018

SNFing HIV transcription

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Enhancement of the p300 HAT activity by HIV-1 Tat on chromatin DNA

21 January 2018

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Acetylation of Tat defines a cyclinT1-independent step in HIV transactivation

21 January 2018

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Effect of SWI/SNF chromatin remodeling complex on HIV-1 Tat activated transcription

21 January 2018

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The SWI/SNF chromatin-remodeling complex is a cofactor for Tat transactivation of the HIV promoter

21 January 2018

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The integrase interactor 1 (INI1) proteins facilitate Tat-mediated human immunodeficiency virus type 1 transcription

21 January 2018

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SIRT1 regulates HIV transcription via Tat deacetylation

21 January 2018

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The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates

21 January 2018

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A dual-tropic primary HIV-1 isolate that uses fusin and the beta-chemokine receptors CKR-5, CKR-3, and CKR-2b as fusion cofactors

21 January 2018

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Chemokine receptor inhibition by AMD3100 is strictly confined to CXCR4.

21 January 2018

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HIV-1 expression induced by anti-cancer agents in latently HIV-1-infected ACH2 cells

21 January 2018

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HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

21 January 2018

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NF-kappaB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation

21 January 2018

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Recruitment of TFIIH to the HIV LTR is a rate-limiting step in the emergence of HIV from latency

21 January 2018

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Human immunodeficiency virus type 1 can establish latent infection in resting CD4+ T cells in the absence of activating stimuli

21 January 2018

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HIV-1 latency in actively dividing human T cell lines

21 January 2018

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Proteomic studies reveal coordinated changes in T-cell expression patterns upon infection with human immunodeficiency virus type 1.

21 January 2018

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Quantitative analysis of human immunodeficiency virus type 1-infected CD4+ cell proteome: dysregulated cell cycle progression and nuclear transport coincide with robust virus production

21 January 2018

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Transient induction of cyclin T1 during human macrophage differentiation regulates human immunodeficiency virus type 1 Tat transactivation function.

21 January 2018

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Phosphorylated positive transcription elongation factor b (P-TEFb) is tagged for inhibition through association with 7SK snRNA.

21 January 2018

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PP2B and PP1alpha cooperatively disrupt 7SK snRNP to release P-TEFb for transcription in response to Ca2+ signaling

21 January 2018

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Dephosphorylation of CDK9 by protein phosphatase 2A and protein phosphatase-1 in Tat-activated HIV-1 transcription

21 January 2018

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Regulation of HIV-1 gene transcription: from lymphocytes to microglial cells

21 January 2018

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NF-IL6-mediated transcriptional activation of the long terminal repeat of the human immunodeficiency virus type 1

21 January 2018

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C/EBPbeta regulates human immunodeficiency virus 1 gene expression through its association with cdk9.

21 January 2018

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HIV-1 Tat induces the expression of the interleukin-6 (IL6) gene by binding to the IL6 leader RNA and by interacting with CAAT enhancer-binding protein beta (NF-IL6) transcription factors

21 January 2018

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Interaction between TGFbeta signaling proteins and C/EBP controls basal and Tat-mediated transcription of HIV-1 LTR in astrocytes

21 January 2018

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A non-proteolytic role for ubiquitin in Tat-mediated transactivation of the HIV-1 promoter

21 January 2018

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Methylation of Tat by PRMT6 regulates human immunodeficiency virus type 1 gene expression

21 January 2018

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Lysine methylation of HIV-1 Tat regulates transcriptional activity of the viral LTR.

21 January 2018

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HIV-1 tat transcriptional activity is regulated by acetylation

21 January 2018

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Controlling the elongation phase of transcription with P-TEFb

21 January 2018

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Requirement for SWI/SNF chromatin-remodeling complex in Tat-mediated activation of the HIV-1 promoter

21 January 2018

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Arginine methylation of the human immunodeficiency virus type 1 Tat protein by PRMT6 negatively affects Tat Interactions with both cyclin T1 and the Tat transactivation region

21 January 2018

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Phosphorylation of HIV-1 Tat by CDK2 in HIV-1 transcription

21 January 2018

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Identifying the membrane proteome of HIV-1 latently infected cells

21 January 2018

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HIV-1 transforms the monocyte plasma membrane proteome

21 January 2018

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Therapeutic targets for HIV-1 infection in the host proteome

21 January 2018

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In vitro nuclear interactome of the HIV-1 Tat protein

21 January 2018

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Antiviral activity of CYC202 in HIV-1-infected cells

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1586/EPR.09.73

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26 July 2017

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