Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells (Q33346650)

26 July 2017

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells (English)

1 reference

26 July 2017

Seraya Maouche

1

0 references

Gilles Montalescot

7

object named as

Gilles Montalescot

1 reference

26 July 2017

Odette Poirier

2

1 reference

26 July 2017

Tiphaine Godefroy

3

1 reference

26 July 2017

Robert Olaso

4

1 reference

26 July 2017

Ivo Gut

5

1 reference

26 July 2017

Jean-Phillipe Collet

6

1 reference

26 July 2017

François Cambien

8

1 reference

26 July 2017

language of work or name

English

0 references

publication date

25 June 2008

1 reference

26 July 2017

1 reference

26 July 2017

9

1 reference

26 July 2017

302

1 reference

describes a project that uses

26 July 2017

limma

object named as

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/2464609

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

Affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-302

0 references

cites work

Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data

21 June 2018

1 reference

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QA/QC issues to aid regulatory acceptance of microarray gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Three methods for optimization of cross-laboratory and cross-platform microarray expression data

21 June 2018

1 reference

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Mediante: a web-based microarray data manager

21 June 2018

1 reference

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Perspectives and limitations of microarray-based gene expression profiling of thyroid tumors.

21 June 2018

1 reference

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Analyzing gene expression data in terms of gene sets: methodological issues

21 June 2018

1 reference

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Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: new molecules and patterns of gene expression

21 June 2018

1 reference

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Rat toxicogenomic study reveals analytical consistency across microarray platforms

21 June 2018

1 reference

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Genomics. Microarray data reproduced, but some concerns remain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Evaluation of external RNA controls for the assessment of microarray performance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Using RNA sample titrations to assess microarray platform performance and normalization techniques

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Selection of differentially expressed genes in microarray data analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes.

21 June 2018

1 reference

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Comparison of the latest commercial short and long oligonucleotide microarray technologies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

The mononuclear phagocyte system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Bioconductor: open software development for computational biology and bioinformatics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Functional plasticity of macrophages: reversible adaptation to changing microenvironments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Decoding randomly ordered DNA arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Normalization of cDNA microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Summaries of Affymetrix GeneChip probe level data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

NetAffx: Affymetrix probesets and annotations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Gene expression studies using microarrays: principles, problems, and prospects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Transcription, genomes, function.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Expression monitoring by hybridization to high-density oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

cDNA microarray analysis reveals fundamental differences in the expression profiles of primary human monocytes, monocyte-derived macrophages, and alveolar macrophages.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

A rapid method for microarray cross platform comparisons using gene expression signatures.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Evaluation of DNA microarray results with quantitative gene expression platforms

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

A simple procedure for estimating the false discovery rate.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2464609

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18578872

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Inflammation and atherosclerosis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18578872

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-302

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-302

9 September 2019

1 reference

26 July 2017

1 reference