High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil (Q33344760)

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English	High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil	scientific article

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scholarly article

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Europe PubMed Central

26 July 2017

High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of I.E.3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil (English)

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Europe PubMed Central

26 July 2017

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Timo P Sipilä

1

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Anna-Kaisa Keskinen

2

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Europe PubMed Central

26 July 2017

Marja-Leena Akerman

3

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Europe PubMed Central

26 July 2017

Carola Fortelius

4

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Europe PubMed Central

26 July 2017

Kielo Haahtela

5

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Europe PubMed Central

26 July 2017

Kim Yrjälä

6

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Europe PubMed Central

26 July 2017

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19 June 2008

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26 July 2017

The ISME Journal

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Europe PubMed Central

26 July 2017

2

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26 July 2017

9

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Europe PubMed Central

26 July 2017

968-981

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Europe PubMed Central

26 July 2017

https://scigraph.springernature.com/pub.10.1038/ismej.2008.50

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Identification of an extradiol dioxygenase involved in tetralin biodegradation: gene sequence analysis and purification and characterization of the gene product

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Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR.

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Biodegradation of polycyclic aromatic hydrocarbons

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Potency equivalency factors for some polycyclic aromatic hydrocarbons and polycyclic aromatic hydrocarbon derivatives.

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Spatial distribution of bacterial communities and phenanthrene degradation in the rhizosphere of Lolium perenne L

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Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds

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Diversity among aromatic hydrocarbon-degrading bacteria and their meta-cleavage genes.

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Abundance of dioxygenase genes similar to Ralstonia sp. strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments

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Long-term change of polycyclic aromatic hydrocarbon deposition to peatlands of eastern Canada

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Exploring the microbial biodegradation and biotransformation gene pool

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Genetics of Polycyclic Aromatic Hydrocarbon Metabolism in Diverse Aerobic Bacteria

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Studies on transformation of Escherichia coli with plasmids

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Residual polymerase activity-induced bias in terminal restriction fragment length polymorphism analysis.

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Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries

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Rhizoremediation: a beneficial plant-microbe interaction

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Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere.

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Development of catechol 2,3-dioxygenase-specific primers for monitoring bioremediation by competitive quantitative PCR.

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Bacterial community structure in soils contaminated by polycyclic aromatic hydrocarbons.

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PAH dissipation in spiked soil: impacts of bioavailability, microbial activity, and trees

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Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation

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Effectiveness of phytoremediation as a secondary treatment for polycyclic aromatic hydrocarbons (PAHs) in composted soil.

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Identification of lumichrome as a sinorhizobium enhancer of alfalfa root respiration and shoot growth

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The unique aromatic catabolic genes in sphingomonads degrading polycyclic aromatic hydrocarbons (PAHs).

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Exudation of organic acid anions from poplar roots after exposure to Al, Cu and Zn.

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Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase

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Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate.

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Design of PCR primers and gene probes for the general detection of bacterial populations capable of degrading aromatic compounds via catechol cleavage pathways.

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Measurement of Diversity

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Novel upper meta-pathway extradiol dioxygenase gene diversity in polluted soil.

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Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed

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Phytoremediation of polycyclic aromatic hydrocarbons in manufactured gas plant-impacted soil

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Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds

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Bacterial rhizosphere populations of black poplar and herbal plants to be used for phytoremediation of diesel fuel

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Microbial diversity and function in soil: from genes to ecosystems

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The ins and outs of ring-cleaving dioxygenases.

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Phytoremediation prospects of willow stands on contaminated sediment: a field trial.

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Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation.

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Remediation of polycyclic aromatic hydrocarbon compounds in groundwater using poplar trees

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Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments

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Clonal variation in survival and growth of hybrid poplar and willow in an in situ trial on soils heavily contaminated with petroleum hydrocarbons

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An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics

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Mycorrhizas and C and N transformations in the rhizospheres of Pinus sylvestris, Picea abies and Betula pendula seedlings

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Evolutionary relationships among extradiol dioxygenases

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Homology between genes for aromatic hydrocarbon degradation in surface and deep-subsurface Sphingomonas strains

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16S ribosomal DNA amplification for phylogenetic study

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Genetics of naphthalene catabolism in pseudomonads

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10.1038/ISMEJ.2008.50

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Europe PubMed Central

26 July 2017

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Europe PubMed Central

26 July 2017

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