Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania (Q33325716)

25 July 2017

Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania (English)

1 reference

25 July 2017

2

Mathieu Blanchette

1 reference

25 July 2017

Martin Smith

1

1 reference

PubMed ID

18366710

25 July 2017

Barbara Papadopoulou

series ordinal

3

1 reference

25 July 2017

20 March 2008

1 reference

25 July 2017

1 reference

25 July 2017

9

1 reference

25 July 2017

158

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-158

25 July 2017

0 references

cites work

Developmental regulation of gene expression in trypanosomatid parasitic protozoa

1 reference

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Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania

21 June 2018

1 reference

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RNA structure: bioinformatic analysis

21 June 2018

1 reference

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Bridging the gap in RNA structure prediction.

21 June 2018

1 reference

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mRNA maturation by two-step trans-splicing/polyadenylation processing in trypanosomes.

21 June 2018

1 reference

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MEME: discovering and analyzing DNA and protein sequence motifs

21 June 2018

1 reference

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21 June 2018

The tree of eukaryotes

1 reference

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A computational investigation of kinetoplastid trans-splicing

21 June 2018

1 reference

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Advances in leishmaniasis

21 June 2018

1 reference

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The genome of the kinetoplastid parasite, Leishmania major

21 June 2018

1 reference

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Comparative genomics of trypanosomatid parasitic protozoa

21 June 2018

1 reference

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trans and cis splicing in trypanosomatids: mechanism, factors, and regulation

21 June 2018

1 reference

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YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation

21 June 2018

1 reference

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Sequence determinants in human polyadenylation site selection

21 June 2018

1 reference

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Life without transcriptional control? From fly to man and back again

21 June 2018

1 reference

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A common mechanism of stage-regulated gene expression in Leishmania mediated by a conserved 3'-untranslated region element.

21 June 2018

1 reference

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Non–coding RNA genes and the modern RNA world

21 June 2018

1 reference

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mRNA 5'-leader trans-splicing in the chordates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Tests of heterologous promoters and intergenic regions in Leishmania major

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Control of polyadenylation and alternative splicing of transcripts from adjacent genes in a procyclin expression site: a dual role for polypyrimidine tracts in trypanosomes?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

A regulatory role for the 5' and 3' untranslated regions in differential expression of hsp83 in Leishmania

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Hierarchies of RNA-processing signals in a trypanosome surface antigen mRNA precursor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Accurate polyadenylation of procyclin mRNAs in Trypanosoma brucei is determined by pyrimidine-rich elements in the intergenic regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Alpha-amanitin-insensitive transcription of variant surface glycoprotein genes provides further evidence for discontinuous transcription in trypanosomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Transcription of the intergenic regions of the tubulin gene cluster of Trypanosoma brucei: evidence for a polycistronic transcription unit in a eukaryote

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

A 5' spliced leader is added in trans to both alpha- and beta-tubulin transcripts in Trypanosoma brucei

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Conserved genes encode guide RNAs in mitochondria of Crithidia fasciculata

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Alternative trans-splicing of the Trypanosoma cruzi LYT1 gene transcript results in compartmental and functional switch for the encoded protein.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Messenger RNA processing sites in Trypanosoma brucei.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Separating real motifs from their artifacts.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

A new developmentally regulated gene family in Leishmania amastigotes encoding a homolog of amastin surface proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

A trans-spliced leader sequence on actin mRNA in C. elegans.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2335281

Conserved nucleotides surrounding the trans-splicing acceptor site and the translation initiation codon in Leishmania genes

31 October 2018

1 reference

12 December 2020

Functional analyses of positions across the 5' splice site of the trypanosomatid spliced leader RNA. Implications for base-pair interaction with U5 and U6 snRNAs

1 reference

12 December 2020

A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes

1 reference

12 December 2020

Coupling of poly(A) site selection and trans-splicing in Leishmania

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-9-158

1 reference

25 July 2017

journals/bmcbi/SmithBP08

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

18366710