Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome (Q33313528)

25 July 2017

Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome (English)

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25 July 2017

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Jason G Mezey

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25 July 2017

Sergey V Nuzhdin

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2

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25 July 2017

Fangfei Ye

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3

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25 July 2017

Corbin D Jones

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4

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25 July 2017

7 January 2008

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25 July 2017

BMC Evolutionary Biology

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25 July 2017

8

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25 July 2017

2

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https://scigraph.springernature.com/pub.10.1186/1471-2148-8-2

25 July 2017

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cites work

Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

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Adaptive gene expression divergence inferred from population genomics

14 July 2018

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Principles of genome evolution in the Drosophila melanogaster species group

14 July 2018

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Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas

14 July 2018

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Oxymoron no more: the expanding world of heterochromatic genes

14 July 2018

1 reference

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Co-expressed yeast genes cluster over a long range but are not regularly spaced

14 July 2018

1 reference

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The evolution of antifungal peptides in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories

14 July 2018

1 reference

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Rapidly evolving genes of Drosophila: differing levels of selective pressure in testis, ovary, and head tissues between sibling species.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

A non-random walk through the genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Elevated polymorphism and divergence in the class C scavenger receptors of Drosophila melanogaster and D. simulans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Clusters of co-expressed genes in mammalian genomes are conserved by natural selection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Bioconductor: open software development for computational biology and bioinformatics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Regional patterns of gene expression in human and chimpanzee brains

14 July 2018

1 reference

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Coexpression of neighboring genes in the genome of Arabidopsis thaliana

14 July 2018

1 reference

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Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Genomics, prior probability, and statistical tests of multiple hypotheses.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

The evolutionary dynamics of eukaryotic gene order

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

The regulatory content of intergenic DNA shapes genome architecture

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Inter-species differences of co-expression of neighboring genes in eukaryotic genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Relationship between gene co-expression and probe localization on microarray slides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Natural selection drives Drosophila immune system evolution.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Spurious spatial periodicity of co-expression in microarray data due to printing design

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Statistical significance for genomewide studies

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

DAVID: Database for Annotation, Visualization, and Integrated Discovery

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Initial sequencing and comparative analysis of the mouse genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Shared strategies in gene organization among prokaryotes and eukaryotes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Evidence for large domains of similarly expressed genes in the Drosophila genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Gene expression neighborhoods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

A global analysis of Caenorhabditis elegans operons

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Consequences of recombination rate variation on quantitative trait locus mapping studies. Simulations based on the Drosophila melanogaster genome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Molecular population genetics of male accessory gland proteins in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Gene ontology: tool for the unification of biology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Heterochromatin and gene expression in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Adaptive protein evolution at the Adh locus in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Relationships within the melanogaster species subgroup of the genus Drosophila ( Sophophora ) - II. Phylogenetic relationships between six species based upon polytene chromosome banding sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

The dimensionality of genetic variation for wing shape in Drosophila melanogaster.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

A gene expression map for the euchromatic genome of Drosophila melanogaster.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

The nature of genetic variation in sex and reproduction-related genes among sibling species of the Drosophila melanogaster complex.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Common pattern of evolution of gene expression level and protein sequence in Drosophila

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Mammalian housekeeping genes evolve more slowly than tissue-specific genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Human chromosome 21 gene expression atlas in the mouse.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Highly expressed genes in yeast evolve slowly.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2266709

Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals

31 October 2018

1 reference

12 December 2020

Natural selection promotes the conservation of linkage of co-expressed genes

1 reference

12 December 2020

The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans

1 reference

12 December 2020

Clusters of adjacent and similarly expressed genes across normal human tissues complicate comparative transcriptomic discovery

1 reference

12 December 2020

Is optimal gene order impossible?

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-8-2

1 reference

Dimensions Publication ID

25 July 2017

0 references

1 reference

25 July 2017

1 reference