Comparative transcriptomics in Yersinia pestis: a global view of environmental modulation of gene expression (Q33304064)

25 July 2017

Comparative transcriptomics in Yersinia pestis: a global view of environmental modulation of gene expression (English)

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25 July 2017

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Ruifu Yang

7

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author name string

Yanping Han

1

1 reference

25 July 2017

Jingfu Qiu

2

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25 July 2017

Zhaobiao Guo

3

1 reference

25 July 2017

He Gao

4

1 reference

25 July 2017

Yajun Song

5

1 reference

25 July 2017

Dongsheng Zhou

6

1 reference

25 July 2017

29 October 2007

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25 July 2017

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25 July 2017

7

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25 July 2017

96

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https://scigraph.springernature.com/pub.10.1186/1471-2180-7-96

25 July 2017

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cites work

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Genome-wide transcriptional response of Yersinia pestis to stressful conditions simulating phagolysosomal environments

28 July 2018

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Microarray expression profiling of Yersinia pestis in response to chloramphenicol.

28 July 2018

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Hierarchy of iron uptake systems: Yfu and Yiu are functional in Yersinia pestis

28 July 2018

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RovA, a global regulator of Yersinia pestis, specifically required for bubonic plague

28 July 2018

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Adaptive response of Yersinia pestis to extracellular effectors of innate immunity during bubonic plague.

28 July 2018

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Global analysis of iron assimilation and fur regulation in Yersinia pestis

28 July 2018

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Salmonella transcriptomics: relating regulons, stimulons and regulatory networks to the process of infection.

28 July 2018

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Progression of primary pneumonic plague: a mouse model of infection, pathology, and bacterial transcriptional activity

28 July 2018

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Molecular and physiological insights into plague transmission, virulence and etiology

28 July 2018

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Transcriptome analysis of the Mg2+-responsive PhoP regulator in Yersinia pestis

28 July 2018

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DNA microarray analysis of the heat- and cold-shock stimulons in Yersinia pestis

28 July 2018

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Turning Yersinia pathogenesis outside in: subversion of macrophage function by intracellular yersiniae

28 July 2018

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A novel method for accurate operon predictions in all sequenced prokaryotes

28 July 2018

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Global gene expression profile of Yersinia pestis induced by streptomycin

28 July 2018

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Microarray analysis of temperature-induced transcriptome of Yersinia pestis

28 July 2018

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The pH 6 antigen is an antiphagocytic factor produced by Yersinia pestis independent of Yersinia outer proteins and capsule antigen

28 July 2018

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What do microarrays really tell us about M. tuberculosis?

28 July 2018

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Temporal global changes in gene expression during temperature transition in Yersinia pestis

28 July 2018

1 reference

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Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus

28 July 2018

1 reference

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Genome-wide operon prediction in Staphylococcus aureus

28 July 2018

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WebLogo: A Sequence Logo Generator

28 July 2018

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Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling

28 July 2018

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Bacterial iron homeostasis

28 July 2018

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Regulatory sequence analysis tools

28 July 2018

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Uses and pitfalls of microarrays for studying transcriptional regulation

28 July 2018

1 reference

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pH6 antigen of Yersinia pestis interacts with plasma lipoproteins and cell membranes

28 July 2018

1 reference

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Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica

28 July 2018

1 reference

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Impact of genomic technologies on studies of bacterial gene expression

28 July 2018

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ArgR-independent induction and ArgR-dependent superinduction of the astCADBE operon in Escherichia coli

28 July 2018

1 reference

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Role of fraction 1 antigen of Yersinia pestis in inhibition of phagocytosis

28 July 2018

1 reference

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Periplasmic nitrate reductase (NapABC enzyme) supports anaerobic respiration by Escherichia coli K-12

28 July 2018

1 reference

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Identification and characterization of the hemophore-dependent heme acquisition system of Yersinia pestis

28 July 2018

1 reference

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Basic microarray analysis: grouping and feature reduction

28 July 2018

1 reference

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Characterization of the Yersinia pestis Yfu ABC inorganic iron transport system

28 July 2018

1 reference

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Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

28 July 2018

1 reference

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Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation

28 July 2018

1 reference

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Sulfur metabolism in Escherichia coli and related bacteria: facts and fiction.

28 July 2018

1 reference

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Identification of the urease operon in Helicobacter pylori and its control by mRNA decay in response to pH.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Deletion analysis of the Escherichia coli taurine and alkanesulfonate transport systems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Gene organization and transcription analysis of the Agrobacterium tumefaciens glycogen (glg) operon: two transcripts for the single phosphoglucomutase gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Cluster analysis and display of genome-wide expression patterns

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

The virulence plasmid of Yersinia, an antihost genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Complete DNA sequence and detailed analysis of the Yersinia pestis KIM5 plasmid encoding murine toxin and capsular antigen

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Anaerobic expression of Escherichia coli succinate dehydrogenase: functional replacement of fumarate reductase in the respiratory chain during anaerobic growth

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

The pH 6 antigen of Yersinia pestis binds to beta1-linked galactosyl residues in glycosphingolipids

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Escherichia coli cAMP receptor protein-DNA complexes. 1. Energetic contributions of half-sites and flanking sequences in DNA recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Combining evidence using p-values: application to sequence homology searches

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Transcriptional activation by FNR and CRP: reciprocity of binding-site recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Genetic organization of the yersiniabactin biosynthetic region and construction of avirulent mutants in Yersinia pestis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Yersinia pestis--etiologic agent of plague

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

pH6 antigen (PsaA protein) of Yersinia pestis, a novel bacterial Fc-receptor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

The ribonucleotide reductase system of Lactococcus lactis. Characterization of an NrdEF enzyme and a new electron transport protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

TonB protein and energy transduction between membranes

28 July 2018

1 reference

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Adaptation of Escherichia coli to high osmolarity environments: osmoregulation of the high-affinity glycine betaine transport system proU.

28 July 2018

1 reference

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Transcriptional control of the nuo operon which encodes the energy-conserving NADH dehydrogenase of Salmonella typhimurium

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

The dnaKJ operon of Agrobacterium tumefaciens: transcriptional analysis and evidence for a new heat shock promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Yersinia pestis grows within phagolysosomes in mouse peritoneal macrophages

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Consensus sequence for Escherichia coli heat shock gene promoters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Virulence genes regulated at the transcriptional level by Ca2+ in Yersinia pestis include structural genes for outer membrane proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

FNR and its role in oxygen-regulated gene expression in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Recombinant capsular antigen (fraction 1) from Yersinia pestis induces a protective antibody response in BALB/c mice

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Yersinia pestis pH 6 antigen: genetic, biochemical, and virulence characterization of a protein involved in the pathogenesis of bubonic plague

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Adaptive responses to oxygen limitation in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Characterization of a hemin-storage locus of Yersinia pestis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

The evolution of flea-borne transmission in Yersinia pestis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Comparative transcriptome analysis of Yersinia pestis in response to hyperosmotic and high-salinity stress

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Interchangeability and distinct properties of bacterial Fe-S cluster assembly systems: functional replacement of the isc and suf operons in Escherichia coli with the nifSU-like operon from Helicobacter pylori.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Regulation of RcsA by the ClpYQ (HslUV) protease in Escherichia coli

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Characterization of urease genes cluster of Streptococcus thermophilus

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Regulation of anaerobic arginine catabolism in Bacillus licheniformis by a protein of the Crp/Fnr family.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

The Yfe system of Yersinia pestis transports iron and manganese and is required for full virulence of plague

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Bacillus subtilis genes for the utilization of sulfur from aliphatic sulfonates

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

An ABC transporter system of Yersinia pestis allows utilization of chelated iron by Escherichia coli SAB11.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: control by cell growth rate

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2231364

31 October 2018

Identifiers

DOI

10.1186/1471-2180-7-96

1 reference

Dimensions Publication ID

25 July 2017

0 references

1 reference

25 July 2017

1 reference