Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy (Q33285992)

25 July 2017

Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy (English)

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25 July 2017

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Brian M Balgley

1

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author name string

Tom Laudeman

2

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25 July 2017

Li Yang

3

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25 July 2017

Tao Song

4

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25 July 2017

Cheng S Lee

5

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25 July 2017

28 May 2007

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Molecular & Cellular Proteomics

25 July 2017

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25 July 2017

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25 July 2017

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25 July 2017

1599-1608

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

25 July 2017

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Open mass spectrometry search algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

TANDEM: matching proteins with tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

21 January 2018

The PeptideAtlas project

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https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Open source system for analyzing, validating, and storing protein identification data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Potential for false positive identifications from large databases through tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Qscore: an algorithm for evaluating SEQUEST database search results

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Probability-based validation of protein identifications using a modified SEQUEST algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Proteome analysis of microdissected tumor tissue using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-tandem MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

On the risk of false positive identification using multiple ion monitoring in qualitative mass spectrometry: large-scale intercomparisons with a comprehensive mass spectral library

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Achieving in-depth proteomics profiling by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

High dynamic range characterization of the trauma patient plasma proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Intensity-based protein identification by machine learning from a library of tandem mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

Membrane Proteome Analysis of Microdissected Ovarian Tumor Tissues Using Capillary Isoelectric Focusing/Reversed-Phase Liquid Chromatography−Tandem MS

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M600469-MCP200

10.1074/MCP.M600469-MCP200

21 January 2018

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DOI

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25 July 2017

1 reference