The use of molecular techniques based on ribosomal RNA and DNA for rumen microbial ecosystem studies: a review (Q33283875)

25 July 2017

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title

The use of molecular techniques based on ribosomal RNA and DNA for rumen microbial ecosystem studies: a review (English)

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25 July 2017

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Metha Wanapat

4

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author name string

Weidong Deng

series ordinal

1

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25 July 2017

Dongmei Xi

series ordinal

2

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25 July 2017

Huaming Mao

series ordinal

3

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25 July 2017

publication date

5 May 2007

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Molecular Biology Reports

25 July 2017

published in

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25 July 2017

volume

35

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25 July 2017

issue

2

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25 July 2017

page(s)

265-274

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maintained by WikiProject

25 July 2017

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https://scigraph.springernature.com/pub.10.1007/s11033-007-9079-1

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cites work

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A comparison of enzymatic and molecular approaches to characterize the cellulolytic microbial ecosystems of the rumen and the cecum

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Phylogenetic analysis of archaea in three fractions of cow rumen based on the 16S rDNA sequence

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Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase

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Invited review: adhesion mechanisms of rumen cellulolytic bacteria

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Kinetic PCR Analysis: Real-time Monitoring of DNA Amplification Reactions

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Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

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Mycobacterium malmoense-specific nested PCR based on a conserved sequence detected in random amplified polymorphic DNA fingerprints

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Kinetics of in sacco fiber-attachment of representative ruminal cellulolytic bacteria monitored by competitive PCR.

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Effect of condensed tannins on bacterial diversity and metabolic activity in the rat gastrointestinal tract

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Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen

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Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria

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The physiological and genetic diversity of bovine Streptococcus bovis strains(1)

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Observation of bias associated with re-amplification of DNA isolated from denaturing gradient gels

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How many ruminal bacteria are there?

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Molecular diversity of rumen methanogens from sheep in Western Australia.

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Assessment of ciliates in the sheep rumen by DGGE.

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DGGE/TGGE a method for identifying genes from natural ecosystems.

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Effects of 2-hydroxy-4-(methylthio) butanoic acid (HMB) on microbial growth in continuous culture

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Ribosomal RNA phylogeny and the primary lines of evolutionary descent

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Phylogenetic analysis of methanogens from the bovine rumen

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On the nature of global classification

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Fibrolytic activities and cellulolytic bacterial community structure in the solid and liquid phases of rumen contents.

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Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in fecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53

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Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA.

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A re-appraisal of the diversity of the methanogens associated with the rumen ciliates

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Technical note: Specific PCR amplification of protozoal 18S rDNA sequences from DNA extracted from ruminal samples of cows

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Phylogeny of the rumen ciliates Entodinium, Epidinium and Polyplastron (Litostomatea:Entodiniomorphida) inferred from small subunit ribosomal RNA sequences

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Genus- and species-specific identification of mycoplasmas by 16S rRNA amplification.

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Myristic acid supports the immediate inhibitory effect of lauric acid on ruminal methanogens and methane release

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Phylogenetic identification and in situ detection of individual microbial cells without cultivation

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ARDRA and RAPD analyses of human and animal isolates of Streptococcus gallolyticus

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Use of DNA probes to monitor nutritional effects on ruminal prokaryotes and Fibrobacter succinogenes S85

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12 December 2020

Isolation and identification of ruminal methanogens from grazing cattle

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Phylogenetic analysis of methanogens in sheep rumen ecosystem and detection of Methanomicrobium mobile By fluorescence in situ hybridization

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12 December 2020

PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples

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12 December 2020

Phylogenetic analysis of archaeal 16S rRNA libraries from the rumen suggests the existence of a novel group of archaea not associated with known methanogens

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Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis

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Development and validation of a nested-PCR-denaturing gradient gel electrophoresis method for taxonomic characterization of bifidobacterial communities

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Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens

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12 December 2020

Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota.

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12 December 2020

Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR.

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12 December 2020

Enumeration of Megasphaera elsdenii in rumen contents by real-time Taq nuclease assay.

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Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies

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Phylogenetic analysis of protozoa in the rumen contents of cow based on the 18S rDNA sequences

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12 December 2020

Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria

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12 December 2020

Differential amplification of rRNA genes by polymerase chain reaction

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12 December 2020

Development of a competitive polymerase chain reaction assay for the ruminal bacterium Butyrivibrio fibrisolvens OB156 and its use for tracking an OB156-derived recombinant.

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12 December 2020

Identification of major Streptococcal species by rrn-amplified ribosomal DNA restriction analysis

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12 December 2020

Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR.

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12 December 2020

Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows

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12 December 2020

Applications of network BLAST server

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12 December 2020

Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints

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12 December 2020

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Analysis of 16S rDNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum

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Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria.

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12 December 2020

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12 December 2020

Comparison of microbial populations in model and natural rumens using 16S ribosomal RNA-targeted probes

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12 December 2020

Group-specific 16S rRNA hybridization probes for determinative and community structure studies of Butyrivibrio fibrisolvens in the rumen

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12 December 2020

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Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences.

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

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12 December 2020

10.1007/S11033-007-9079-1

Identifiers

DOI

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Dimensions Publication ID

25 July 2017

1032115985

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