Sense-antisense pairs in mammals: functional and evolutionary considerations (Q33279356)

25 July 2017

Sense-antisense pairs in mammals: functional and evolutionary considerations (English)

1 reference

25 July 2017

Daniel O Vidal

2

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Anamaria Aranha Camargo

object named as

Anamaria A Camargo

series ordinal

4

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Sandro José de Souza

series ordinal

5

object named as

Sandro J de Souza

1 reference

PubMed ID

17371592

Pedro Alexandre Favoretto Galante

25 July 2017

series ordinal

1

object named as

Pedro A F Galante

1 reference

25 July 2017

Jorge E de Souza

3

1 reference

25 July 2017

1 January 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

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25 July 2017

R40

1 reference

25 July 2017

3

1 reference

https://scigraph.springernature.com/pub.10.1186/gb-2007-8-3-r40

25 July 2017

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cites work

Overlapping antisense transcription in the human genome

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Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

14 July 2018

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Complex Loci in human and mouse genomes

14 July 2018

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Evolutionary fate of retroposed gene copies in the human genome

14 July 2018

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Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts

14 July 2018

1 reference

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Emergence of young human genes after a burst of retroposition in primates

14 July 2018

1 reference

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Antisense transcription in the mammalian transcriptome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Alternative pre-mRNA processing regulates cell-type specific expression of the IL4l1 and NUP62 genes

14 July 2018

1 reference

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Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

14 July 2018

1 reference

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Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation

14 July 2018

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Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

14 July 2018

1 reference

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Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Identification of human exons overexpressed in tumors through the use of genome and expressed sequence data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Naturally occurring antisense: transcriptional leakage or real overlap?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

The impact of SNPs on the interpretation of SAGE and MPSS experimental data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Over 20% of human transcripts might form sense-antisense pairs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Generation of longer 3' cDNA fragments from massively parallel signature sequencing tags

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Genomic variants in exons and introns: identifying the splicing spoilers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

14 July 2018

In search of antisense

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Extensive gene traffic on the mammalian X chromosome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

The origin of new genes: glimpses from the young and old

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense regulation in X inactivation and autosomal imprinting

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense transcripts with FANTOM2 clone set and their implications for gene regulation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

A quantitative analysis of intron effects on mammalian gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Widespread occurrence of antisense transcription in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Computational discovery of sense-antisense transcription in the human and mouse genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense RNA in imprinting: spreading silence through Air.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

An anatomy of normal and malignant gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Long-range heterogeneity at the 3' ends of human mRNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Transcriptional collision between convergent genes in budding yeast.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense-RNA regulation and RNA interference

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

BLAT—The BLAST-Like Alignment Tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense transcripts in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

EMBOSS: the European Molecular Biology Open Software Suite

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

A computer program for aligning a cDNA sequence with a genomic DNA sequence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Do natural antisense transcripts make sense in eukaryotes?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Serial analysis of gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Antisense RNA inhibits splicing of pre-mRNA in vitro

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Detection and evaluation of intron retention events in the human transcriptome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

ORESTES are enriched in rare exon usage variants affecting the encoded proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Expression of alternatively spliced FGF-2 antisense RNA transcripts in the central nervous system: regulation of FGF-2 mRNA translation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1868933

Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts

31 October 2018

1 reference

12 December 2020

Pseudogenes in yeast?

1 reference

12 December 2020

Post-transcriptional regulation of thyroid hormone receptor expression by cis-acting sequences and a naturally occurring antisense RNA

1 reference

12 December 2020

Heterogeneous Sp1 mRNAs in human HepG2 cells include a product of homotypic trans-splicing

1 reference

12 December 2020

Human antisense genes have unusually short introns: evidence for selection for rapid transcription

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2007-8-3-R40

1 reference

PubMed ID

17371592

Dimensions Publication ID

25 July 2017

0 references

1 reference

25 July 2017

1 reference

PubMed ID

17371592