Genotypic microbial community profiling: a critical technical review (Q33277339)

25 July 2017

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title

Genotypic microbial community profiling: a critical technical review (English)

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25 July 2017

Andreas Nocker

1

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25 July 2017

Mark Burr

series ordinal

2

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25 July 2017

Anne K Camper

series ordinal

3

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25 July 2017

8 March 2007

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25 July 2017

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25 July 2017

54

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25 July 2017

2

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25 July 2017

276-289

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https://scigraph.springernature.com/pub.10.1007/s00248-006-9199-5

25 July 2017

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Lactic acid bacteria evolution during winemaking: use of rpoB gene as a target for PCR-DGGE analysis

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Bias in template-to-product ratios in multitemplate PCR

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Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes.

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12 December 2020

Identification of major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products

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12 December 2020

Impact of soil drying-rewetting stress on microbial communities and activities and on degradation of two crop protection products

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12 December 2020

Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability

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12 December 2020

Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis

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12 December 2020

Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing

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12 December 2020

Genetic diversity of nifH gene sequences in paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments

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12 December 2020

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

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12 December 2020

Diversity of mercury resistance determinants among Bacillus strains isolated from sediment of Minamata Bay.

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12 December 2020

Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling

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12 December 2020

Separation of DNA strands facilitates detection of point mutations by PCR-SSCP

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12 December 2020

GC fractionation enhances microbial community diversity assessment and detection of minority populations of bacteria by denaturing gradient gel electrophoresis

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12 December 2020

Microbial community structure in midgut and hindgut of the humus-feeding larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae).

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12 December 2020

Identifying microbial diversity in the natural environment: a molecular phylogenetic approach.

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12 December 2020

DGGE/TGGE a method for identifying genes from natural ecosystems.

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12 December 2020

Rapid identification and differentiation of the soft rot erwinias by 16S-23S intergenic transcribed spacer-PCR and restriction fragment length polymorphism analyses

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12 December 2020

Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure

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12 December 2020

The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species

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12 December 2020

Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms

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12 December 2020

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

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12 December 2020

A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences.

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12 December 2020

Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries

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12 December 2020

Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire

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12 December 2020

Fluorophore-labeled primers improve the sensitivity, versatility, and normalization of denaturing gradient gel electrophoresis

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12 December 2020

Denaturing gradient gel electrophoresis can rapidly display the bacterial diversity contained in 16S rDNA clone libraries

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12 December 2020

Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis

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12 December 2020

Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism

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12 December 2020

16S ribosomal DNA amplification for phylogenetic study

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12 December 2020

Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology.

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12 December 2020

Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products

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12 December 2020

Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii

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12 December 2020

Culture-independent identification of pathogenic bacteria and polymicrobial infections in the genitourinary tract of renal transplant recipients

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12 December 2020

Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils

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12 December 2020

Denaturing HPLC for identifying bacteria

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12 December 2020

Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns

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12 December 2020

Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products.

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12 December 2020

Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm

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12 December 2020

Denaturing high-performance liquid chromatography detects reliably BRCA1 and BRCA2 mutations

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12 December 2020

Improved efficiency of mutation detection by denaturing high-performance liquid chromatography using modified primers and hybridization procedure

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12 December 2020

Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis

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12 December 2020

Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis

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12 December 2020

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

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12 December 2020

Phylogenetic diversity of sulfate-reducing prokaryotes in active deep-sea hydrothermal vent chimney structures

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12 December 2020

Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis.

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12 December 2020

Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics

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12 December 2020

DNA rehybridization during PCR: the 'Cot effect' and its consequences

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12 December 2020

Community structure and metabolism through reconstruction of microbial genomes from the environment

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12 December 2020

Structure and topology of microbial communities in the major gut compartments of Melolontha melolontha larvae (Coleoptera: Scarabaeidae).

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12 December 2020

Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes

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12 December 2020

Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis

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12 December 2020

New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities

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12 December 2020

Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis

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12 December 2020

Profiling and monitoring of microbial populations by denaturing high-performance liquid chromatography.

1 reference

12 December 2020

Comparison of crenarchaeal consortia inhabiting the rhizosphere of diverse terrestrial plants with those in bulk soil in native environments

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12 December 2020

General method for direct cloning of DNA fragments generated by the polymerase chain reaction

1 reference

12 December 2020

Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms

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12 December 2020

16S rRNA sequences reveal numerous uncultured microorganisms in a natural community

1 reference

12 December 2020

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

1 reference

12 December 2020

Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense

1 reference

12 December 2020

Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms.

1 reference

12 December 2020

Molecular identification of bacteria by fluorescence-based PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene

1 reference

12 December 2020

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

1 reference

12 December 2020

Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities

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12 December 2020

Stable-isotope probing as a tool in microbial ecology

1 reference

12 December 2020

Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia.

1 reference

12 December 2020

Differential amplification of rRNA genes by polymerase chain reaction

1 reference

12 December 2020

A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis.

1 reference

12 December 2020

RNA fingerprinting--a new method to screen for differences in plant litter degrading microbial communities

1 reference

12 December 2020

Genetic Diversity through the Looking Glass: Effect of Enrichment Bias.

1 reference

12 December 2020

Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure

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12 December 2020

Bacteria associated with hazelnut (Corylus avellana L.) decline are of two groups: Pseudomonas avellanae and strains resembling P. syringae pv. syringae

1 reference

12 December 2020

RNA stable isotope probing, a novel means of linking microbial community function to phylogeny.

1 reference

12 December 2020

Methods of studying soil microbial diversity

1 reference

12 December 2020

Modeling of heteroduplex formation during PCR from mixtures of DNA templates

1 reference

12 December 2020

Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities

1 reference

12 December 2020

Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms

1 reference

12 December 2020

Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities

1 reference

12 December 2020

Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria

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12 December 2020

[Diversity of halophilic archaea in hypersaline lakes of Inner Mongolia, China].

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12 December 2020

Community analysis of a mercury hot spring supports occurrence of domain-specific forms of mercuric reductase

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12 December 2020

Denaturing high-performance liquid chromatography: A review

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12 December 2020

Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity

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12 December 2020

Three stages of a biofilm community developing at the liquid-liquid interface between polychlorinated biphenyls and water

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12 December 2020

Rapid Identification of Rhizobia by Restriction Fragment Length Polymorphism Analysis of PCR-Amplified 16S rRNA Genes.

1 reference

12 December 2020

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples

1 reference

12 December 2020

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

1 reference

12 December 2020

A new version of the RDP (Ribosomal Database Project).

1 reference

12 December 2020

Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities

1 reference

12 December 2020

Environmental genome shotgun sequencing of the Sargasso Sea

1 reference

12 December 2020

An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics

1 reference

12 December 2020

Evaluation and application of denaturing HPLC for mutation detection in Marfan syndrome: Identification of 20 novel mutations and two novel polymorphisms in the FBN1 gene

1 reference

12 December 2020

Single-Stranded Conformational Polymorphism Analysis Using Automated Capillary Array Electrophoresis Apparatuses

1 reference

12 December 2020

Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon cascade mountain range

1 reference

12 December 2020

Potential limitations of the 16S-23S rRNA intergenic region for molecular detection of Bartonella species.

1 reference

12 December 2020

Bacterial community structure and diversity in a century-old manure-treated agroecosystem.

1 reference

12 December 2020

Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function.

1 reference

12 December 2020

Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia

1 reference

12 December 2020

Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

1 reference

12 December 2020

Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats

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12 December 2020

Prokaryotic diversity and the importance of culturing

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12 December 2020

pmoA-based analysis of methanotrophs in a littoral lake sediment reveals a diverse and stable community in a dynamic environment.

1 reference

12 December 2020

Microbial population changes during bioremediation of an experimental oil spill.

1 reference

12 December 2020

Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques

1 reference

12 December 2020

Metagenomics: genomic analysis of microbial communities

1 reference

12 December 2020

Influence of elevated CO(2) on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis

1 reference

12 December 2020

RNA fingerprinting of microbial community in the rhizosphere soil of grain legumes.

1 reference

12 December 2020

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

1 reference

12 December 2020

Environmental genomics, the big picture?

1 reference

12 December 2020

A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature

1 reference

12 December 2020

Cumulative effects of short-term polymetal contamination on soil bacterial community structure

1 reference

12 December 2020

Molecular diversity of native bradyrhizobia isolated from lima bean (Phaseolus lunatus L.) in Peru.

1 reference

12 December 2020

10.1007/S00248-006-9199-5

Identifiers

DOI

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Dimensions Publication ID

25 July 2017

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