QPath: a method for querying pathways in a protein-protein interaction network (Q33239513)

24 July 2017

QPath: a method for querying pathways in a protein-protein interaction network (English)

1 reference

protein-protein interaction

24 July 2017

1 reference

3

Eytan Ruppin

1 reference

24 July 2017

4

Roded Sharan

1 reference

24 July 2017

Tomer Shlomi

1

1 reference

PubMed ID

16606460

24 July 2017

Daniel Segal

series ordinal

2

1 reference

24 July 2017

10 April 2006

1 reference

24 July 2017

1 reference

24 July 2017

7

1 reference

24 July 2017

199

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-7-199

24 July 2017

0 references

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A human protein-protein interaction network: a resource for annotating the proteome

28 July 2018

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Protein interaction mapping: a Drosophila case study

28 July 2018

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Conserved patterns of protein interaction in multiple species

28 July 2018

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The Stanford Microarray Database accommodates additional microarray platforms and data formats

28 July 2018

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28 July 2018

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A Drosophila protein-interaction map centered on cell-cycle regulators

28 July 2018

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Combining biological networks to predict genetic interactions

28 July 2018

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The Hedgehog response network: sensors, switches, and routers

28 July 2018

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Genome-wide RNAi analysis of growth and viability in Drosophila cells

28 July 2018

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28 July 2018

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The Database of Interacting Proteins: 2004 update

28 July 2018

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A protein interaction map of Drosophila melanogaster

28 July 2018

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Conserved pathways within bacteria and yeast as revealed by global protein network alignment

28 July 2018

1 reference

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A gene-coexpression network for global discovery of conserved genetic modules

28 July 2018

1 reference

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How reliable are experimental protein-protein interaction data?

28 July 2018

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Mass spectrometry-based proteomics

28 July 2018

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The GRID: the General Repository for Interaction Datasets

28 July 2018

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Comparative assessment of large-scale data sets of protein-protein interactions

28 July 2018

1 reference

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Intra- and interspecific variation in primate gene expression patterns

28 July 2018

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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

28 July 2018

1 reference

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Functional organization of the yeast proteome by systematic analysis of protein complexes

28 July 2018

1 reference

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Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

28 July 2018

1 reference

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Archipelago regulates Cyclin E levels in Drosophila and is mutated in human cancer cell lines

28 July 2018

1 reference

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A comprehensive two-hybrid analysis to explore the yeast protein interactome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters

28 July 2018

1 reference

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Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

KEGG: kyoto encyclopedia of genes and genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Pathway alignment: application to the comparative analysis of glycolytic enzymes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Ectopic expression of activated Ras1 induces hyperplastic growth and increased cell death in Drosophila imaginal tissues

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

A novel genetic system to detect protein-protein interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

A query language for biological networks.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Identifying active transcription factors and kinases from expression data using pathway queries

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Alignment of metabolic pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Drosophila Nek2 protein kinase knockdown leads to centrosome maturation defects while overexpression causes centrosome fragmentation and cytokinesis failure.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

The Drosophila F box protein archipelago regulates dMyc protein levels in vivo

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Assessment of the reliability of protein-protein interactions and protein function prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Saccharomyces Genome Database

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Phylogenetic analysis of metabolic pathways.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

Dual function of Ras in Raf activation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

The Dfur2 gene of Drosophila melanogaster: genetic organization, expression during embryogenesis, and pro-protein processing activity of its translational product Dfurin2.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1458361

31 October 2018

Identifiers

DOI

10.1186/1471-2105-7-199

1 reference

journals/bmcbi/ShlomiSRS06

24 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference

PubMed ID

16606460