The SUPERFAMILY database in 2004: additions and improvements (Q33196072)

23 July 2017

The SUPERFAMILY database in 2004: additions and improvements (English)

1 reference

23 July 2017

0 references

1

Martin Madera

1 reference

23 July 2017

4

Cyrus Chothia

1 reference

23 July 2017

5

Julian Gough

1 reference

23 July 2017

2

Christine Vogel

1 reference

23 July 2017

3

Sarah K Kummerfeld

1 reference

PubMed ID

14681402

23 July 2017

language of work or name

English

0 references

publication date

1 January 2004

1 reference

23 July 2017

Nucleic Acids Research

1 reference

23 July 2017

32

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23 July 2017

D235-9

1 reference

23 July 2017

Database issue

1 reference

Evolution of the protein repertoire

23 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

The InterPro database, 2003 brings increased coverage and new features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

A comparison of profile hidden Markov model procedures for remote homology detection

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

The geometry of domain combination in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

InterProScan--an integration platform for the signature-recognition methods in InterPro

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Creating the gene ontology resource: design and implementation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Comparison of sequence profiles. Strategies for structural predictions using sequence information

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

28 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Hidden Markov models for detecting remote protein homologies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Profile hidden Markov models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

SCOP: a structural classification of proteins database for the investigation of sequences and structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Annotation transfer for genomics: measuring functional divergence in multi-domain proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=308851

31 October 2018

Identifiers

DOI

10.1093/NAR/GKH117

1 reference

journals/nar/MaderaVKCG04

23 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

23 July 2017

1 reference

PubMed ID

14681402