Stability of the beta-sheet of the WW domain: A molecular dynamics simulation study (Q33178985)

23 July 2017

Stability of the beta-sheet of the WW domain: A molecular dynamics simulation study (English)

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molecular dynamics simulation

23 July 2017

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author name string

G T Ibragimova

series ordinal

1

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PubMed ID

10512838

23 July 2017

R C Wade

series ordinal

2

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PubMed ID

10512838

23 July 2017

language of work or name

English

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publication date

1 October 1999

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23 July 2017

8

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based on heuristic

inferred from page(s)

published in

Biophysical Journal

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23 July 2017

77

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23 July 2017

2191-2198

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23 July 2017

4

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WW: An isolated three-stranded antiparallel beta-sheet domain that unfolds and refolds reversibly; evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state

23 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Design of a 20-amino acid, three-stranded beta-sheet protein.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Importance of explicit salt ions for protein stability in molecular dynamics simulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Local versus nonlocal interactions in protein folding and stability--an experimentalist's point of view

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

From Levinthal to pathways to funnels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

TRAJAN: a tool for analyzing trajectories from molecular simulations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Formin binding proteins bear WWP/WW domains that bind proline-rich peptides and functionally resemble SH3 domains

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

21 June 2018

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977059-1

Determinants of strand register in antiparallel beta-sheets of proteins

7 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

Structure and function of the WW domain.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

WW domains and retrovirus budding

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300499

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

31 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977059-1

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977059-1

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977059-1

Impact of Cl- and Na+ ions on simulated structure and dynamics of betaARK1 PH domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977059-1

Guidelines for protein design: the energetics of beta sheet side chain interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977059-1

10.1016/S0006-3495(99)77059-1

7 January 2021

Identifiers

DOI

1 reference

23 July 2017

1 reference

23 July 2017

1 reference

PubMed ID

10512838