An evaluation of processing methods for HumanMethylation450 BeadChip data (Q31110147)

17 August 2017

An evaluation of processing methods for HumanMethylation450 BeadChip data (English)

1 reference

17 August 2017

Jie Liu

1

1 reference

17 August 2017

Kimberly D Siegmund

series ordinal

2

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17 August 2017

language of work or name

English

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publication date

22 June 2016

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17 August 2017

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17 August 2017

17

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17 August 2017

469

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describes a project that uses

17 August 2017

minfi

object named as

minfi

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12864-016-2819-7

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cites work

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Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data

14 July 2018

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Long-range epigenetic regulation is conferred by genetic variation located at thousands of independent loci

14 July 2018

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Orchestrating high-throughput genomic analysis with Bioconductor

14 July 2018

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Functional normalization of 450k methylation array data improves replication in large cancer studies.

14 July 2018

1 reference

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Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data

14 July 2018

1 reference

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Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

14 July 2018

1 reference

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A systematic assessment of normalization approaches for the Infinium 450K methylation platform

14 July 2018

1 reference

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A comprehensive overview of Infinium HumanMethylation450 data processing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Review of processing and analysis methods for DNA methylation array data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Cigarette smoking and DNA methylation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

A data-driven approach to preprocessing Illumina 450K methylation array data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Low-level processing of Illumina Infinium DNA Methylation BeadArrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Environmental chemical exposures and human epigenetics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Epigenetic modifications and human disease

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

DNA methylation profiling of human chromosomes 6, 20 and 22

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

Adjusting batch effects in microarray expression data using empirical Bayes methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

DNA methylation in cancer: too much, but also too little

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918139

The control of the false discovery rate in multiple testing under dependency

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2819-7

Evaluation of the Infinium Methylation 450K technology

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27334613

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-016-2819-7

1 reference

Dimensions Publication ID

17 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-016-2819-7

Fatcat ID

release_nukp6iocn5bfxiteiawnmlfd2e

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Fatcat

https://api.fatcat.wiki/v0/release/nukp6iocn5bfxiteiawnmlfd2e

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

17 August 2017

1 reference