Discovery of principles of nature from mathematical modeling of DNA microarray data (Q31069188)

9 September 2017

Discovery of principles of nature from mathematical modeling of DNA microarray data (English)

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9 September 2017

1

principal investigator

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PMCID

1637536

9 September 2017

language of work or name

English

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publication date

23 October 2006

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PMCID

1637536

external data available at URL

9 September 2017

https://alterlab.org/publications/Alter_PNAS_2006.pdf

title

Alter Lab (English)

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published in

Proceedings of the National Academy of Sciences of the United States of America

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9 September 2017

103

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9 September 2017

16063-16064

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9 September 2017

44

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A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change

9 September 2017

1 reference

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Genome-wide hierarchy of replication origin usage in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Singular value decomposition of genome-scale mRNA lengths distribution reveals asymmetry in RNA gel electrophoresis band broadening

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Cohesin relocation from sites of chromosomal loading to places of convergent transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Response experiments for nonlinear systems with application to reaction kinetics and genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

A genomewide oscillation in transcription gates DNA replication and cell cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices

21 June 2018

1 reference

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Characterizing the physical genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

A transcription factor response element for gene expression during circadian night

21 June 2018

1 reference

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Reverse engineering gene networks using singular value decomposition and robust regression

21 June 2018

1 reference

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Singular value decomposition for genome-wide expression data processing and modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

A synthetic oscillatory network of transcriptional regulators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Exploring the new world of the genome with DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Cell cycle synchronization of Gonyaulax polyedra by filtration: quantized generation times.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

Quantized generation time in mammalian cells as an expression of the cellular clock

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1637536

A synthetic gene-metabolic oscillator.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0607650103

The Unreasonable Effectiveness of Mathematics in the Natural Sciences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0607650103

Yeast origin recognition complex is involved in DNA replication and transcriptional silencing.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0607650103

21 January 2018

Identifiers

DOI

10.1073/PNAS.0607650103

1 reference

9 September 2017

0 references

1 reference

9 September 2017

1 reference

PMCID

1637536