Five nuclear loci resolve the polyploid history of switchgrass (Panicum virgatum L.) and relatives (Q31066744)

11 August 2017

Five nuclear loci resolve the polyploid history of switchgrass (Panicum virgatum L.) and relatives (English)

1 reference

11 August 2017

0 references

1 reference

Jinshun Zhong

3

0 references

Elizabeth Anne Kellogg

object named as

Elizabeth A Kellogg

series ordinal

4

0 references

author name string

Jimmy K Triplett

series ordinal

1

1 reference

PMCID

3377691

11 August 2017

Yunjing Wang

series ordinal

2

1 reference

PMCID

3377691

11 August 2017

language of work or name

English

0 references

publication date

18 June 2012

1 reference

11 August 2017

1 reference

11 August 2017

7

1 reference

11 August 2017

6

1 reference

11 August 2017

e38702

1 reference

Creative Commons Attribution 4.0 International

11 August 2017

start time

18 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Ancestral polyploidy in seed plants and angiosperms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Complete switchgrass genetic maps reveal subgenome collinearity, preferential pairing and multilocus interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

jModelTest: phylogenetic model averaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

An Arabidopsis endo-1,4-beta-D-glucanase involved in cellulose synthesis undergoes regulated intracellular cycling.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Recent developments on cellulases and carbohydrate-binding modules with cellulose affinity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Epigenetic phenomena and the evolution of plant allopolyploids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Towards understanding the role of membrane-bound endo-beta-1,4-glucanases in cellulose biosynthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Microbial cellulose utilization: fundamentals and biotechnology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

An approximately unbiased test of phylogenetic tree selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Genome evolution in polyploids

21 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

21 June 2018

12 December 2020

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3377691

Progenitor-derivative relationships of Hordeum polyploids (Poaceae, Triticeae) inferred from sequences of TOPO6, a nuclear low-copy gene region

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

A molecular phylogeny of Panicum (Poaceae: Paniceae): tests of monophyly and phylogenetic placement within the Panicoideae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Parodiophyllochloa , a New Genus Segregated from Panicum (Paniceae, Poaceae) Based on Morphological and Molecular Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Revision y Analysis Cladistico de Steinchisma (Poaceae: Panicoideae: Paniceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

On the Taxonomic Position of Panicum aristellum (Poaceae: Panicoideae: Paniceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Oligocene CO2 decline promoted C4 photosynthesis in grasses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

A Biosystematic Study of the Panicum amarum-P. amarulum Complex (Gramineae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

A comparative genomics strategy for targeted discovery of single-nucleotide polymorphisms and conserved-noncoding sequences in orphan crops.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Phylogenetic analysis of the plant endo-beta-1,4-glucanase gene family

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Primaclade--a flexible tool to find conserved PCR primers across multiple species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Chromosome Counts of Missouri Asteraceae and Poaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Chromosome Numbers and Incidence of Polyploidy in Panicoideae (Poaceae) from Pakistan

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Congruence, Conflict, and Polyploidization Shown by Nuclear and Chloroplast Markers in the Monophyletic ''Bristle Clade'' (Paniceae, Panicoideae, Poaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0038702

Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes

21 January 2018

1 reference

12 December 2020

A simple and rapid method for the preparation of total plant DNA

1 reference

12 December 2020

Recombinant DNA sequences generated by PCR amplification

1 reference

12 December 2020

Investigation of genomic organization in switchgrass (Panicum virgatum L.) using DNA markers

1 reference

12 December 2020

A molecular phylogeny of the grass subfamily Panicoideae (Poaceae) shows multiple origins of C4 photosynthesis

1 reference

12 December 2020

Phylogenetic relationships and reticulation among Asian Elymus (Poaceae) allotetraploids: analyses of three nuclear gene trees

1 reference

12 December 2020

Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species (Poaceae) based on base-pair substitutions, indels, and microsatellites in chloroplast noncoding sequences

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0038702

Identifiers

DOI

1 reference

11 August 2017

0 references

1 reference

11 August 2017

1 reference

PMCID

3377691