DNA-protein interactions: methods for detection and analysis (Q31049689)

28 June 2017

DNA-protein interactions: methods for detection and analysis (English)

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28 June 2017

Bipasha Dey

1

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28 June 2017

Sameer Thukral

2

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28 June 2017

Shruti Krishnan

3

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28 June 2017

Mainak Chakrobarty

4

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28 June 2017

Sahil Gupta

5

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28 June 2017

Chanchal Manghani

6

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28 June 2017

Vibha Rani

7

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28 June 2017

8 March 2012

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Molecular and Cellular Biochemistry

28 June 2017

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28 June 2017

365

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28 June 2017

1-2

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28 June 2017

279-299

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https://scigraph.springernature.com/pub.10.1007/s11010-012-1269-z

28 June 2017

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

21 January 2018

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High-resolution profiling of histone methylations in the human genome

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21 January 2018

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Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation

21 January 2018

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21 January 2018

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The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

21 January 2018

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MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes

21 January 2018

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ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.

21 January 2018

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BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

21 January 2018

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Fluorescence-intensity distribution analysis and its application in biomolecular detection technology

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Capillary electrophoresis for the characterization of quantum dots after non-selective or selective bioconjugation with antibodies for immunoassay

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Detection of protein-DNA complex formation by time-resolved fluorescence depolarization of bound ethidium bromide.

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Gel electrophoresis using a fluorescence agent for analysis and purification of non-labeled synthetic DNA fragments

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Quantitative analysis of DNA-protein interactions using double-labeled native gel electrophoresis and fluorescence-based imaging.

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A highly sensitive near-infrared fluorescent detection method to analyze signalling pathways by reverse-phase protein array

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Dissecting DNA-protein and protein-protein interactions involved in bacterial transcriptional regulation by a sensitive protein array method combining a near-infrared fluorescence detection

21 January 2018

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Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations

21 January 2018

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Functional studies of DNA-protein interactions using FRET techniques.

21 January 2018

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Intercellular trafficking of VP22-GFP fusion proteins

21 January 2018

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Fluorescence lifetime imaging microscopy

21 January 2018

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Imaging in situ protein-DNA interactions in the cell nucleus using FRET-FLIM.

21 January 2018

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Studying DNA-protein interactions using NMR

21 January 2018

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Nuclear magnetic resonance analysis of protein-DNA interactions

21 January 2018

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Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy

21 January 2018

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Determining binding sites in protein-nucleic acid complexes by cross-saturation

21 January 2018

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21 January 2018

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The use of circular dichroism in the investigation of protein structure and function.

21 January 2018

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Circular dichroism and its application to the study of biomolecules.

21 January 2018

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21 January 2018

Atomic force microscope

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Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: silatrane surface chemistry

21 January 2018

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Atomic force microscopy imaging of DNA covalently immobilized on a functionalized mica substrate

21 January 2018

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UV light-damaged DNA and its interaction with human replication protein A: an atomic force microscopy study

21 January 2018

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Biosensor-surface plasmon resonance: quantitative analysis of small molecule-nucleic acid interactions

21 January 2018

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Direct measurement of protein binding energetics by isothermal titration calorimetry

21 January 2018

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Survey of the year 2005: literature on applications of isothermal titration calorimetry

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Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition

21 January 2018

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Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus

21 January 2018

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Structural properties of long- and short-chain alcohol dehydrogenases. Contribution of NAD+ to stability

21 January 2018

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21 January 2018

12 December 2020

Footprinting with an automated capillary DNA sequencer

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12 December 2020

Structural specificities of five commonly used DNA nucleases

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12 December 2020

Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

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12 December 2020

An improved method for Southwestern blotting

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12 December 2020

Nonradioactive southwestern analysis using chemiluminescent detection

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12 December 2020

One-hybrid systems for detecting protein-DNA interactions

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12 December 2020

Optimizing antibody immobilization strategies for the construction of protein microarrays

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Chromatin immunoprecipitation assay

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Kinetics and mechanism in the reaction of gene regulatory proteins with DNA

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Analysis of protein-DNA interactions using surface plasmon resonance

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Footprinting protein-DNA complexes using the hydroxyl radical

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Footprinting with MPE{middle dot}Fe(II). Complementary-strand Analyses of Distamycin- and Actinomycin-binding Sites on Heterogeneous DNA

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Differential scanning calorimetry

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Atomic force microscopy comes of age.

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ChIP Display: novel method for identification of genomic targets of transcription factors

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Immunodepletion EMSA: a novel method to identify proteins in a protein-DNA complex

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Long-range and highly sensitive DNase I footprinting by an automated infrared DNA sequencer.

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DNase I footprinting of small molecule binding sites on DNA.

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The use of micrococcal nuclease as a probe for drug-binding sites on DNA

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Localization of cyclic adenosine 3',5'-monophosphate-responsive element (CRE)-binding proteins by southwestern histochemistry

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12 December 2020

Determination of a transcription-factor-binding site by nuclease protection footprinting onto southwestern blots

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12 December 2020

PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces

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12 December 2020

Caution is advised when cDNA expression libraries are screened by southwestern methodologies.

1 reference

12 December 2020

Engineering nucleic acid-binding proteins by phage display

1 reference

12 December 2020

Dissociation kinetics of actinomycin D from individual GpC sites in DNA

1 reference

12 December 2020

10.1007/S11010-012-1269-Z

Identifiers

DOI

1 reference

Dimensions Publication ID

28 June 2017

0 references

1 reference