Transforming omics data into context: bioinformatics on genomics and proteomics raw data (Q31043070)

28 June 2017

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title

Transforming omics data into context: bioinformatics on genomics and proteomics raw data (English)

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28 June 2017

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Paul Perco

1

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Gert Mayer

object named as

Gert Mayer

6

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author name string

Ronald Rapberger

2

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28 June 2017

Christian Siehs

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28 June 2017

Arno Lukas

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28 June 2017

Rainer Oberbauer

5

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28 June 2017

Bernd Mayer

7

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28 June 2017

1 July 2006

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28 June 2017

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27

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13

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28 June 2017

2659-2675

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Genome-wide gene-expression patterns of donor kidney biopsies distinguish primary allograft function

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Molecular signature of mice T lymphocytes following tolerance induction by allogeneic BMT and CD40-CD40L costimulation blockade.

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Exploring the new world of the genome with DNA microarrays

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Spotted long oligonucleotide arrays for human gene expression analysis.

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High density synthetic oligonucleotide arrays

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Current two-dimensional electrophoresis technology for proteomics

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Qualitative analysis of Coomassie-blue-stained proteins from normal prostate, benign prostatic hypertrophy, or adenocarcinoma of the prostate, separated by two-dimensional protein electrophoresis

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Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

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Protein identification by mass profile fingerprinting.

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Current developments in SELDI affinity technology

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Isoelectric focusing nonporous silica reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry: a three-dimensional liquid-phase protein separation method as applied to the human erythroleukemia

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Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology

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Difference gel electrophoresis: a single gel method for detecting changes in protein extracts

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Global quantitative phosphoprotein analysis using Multiplexed Proteomics technology

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Quantitative protein profiling using two-dimensional gel electrophoresis, isotope-coded affinity tag labeling, and mass spectrometry

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Genomics and proteomics--the way forward

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ArrayExpress--a public repository for microarray gene expression data at the EBI

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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

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The Stanford Microarray Database: data access and quality assessment tools

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The Stanford Microarray Database accommodates additional microarray platforms and data formats

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

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Design and implementation of microarray gene expression markup language (MAGE-ML)

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7 January 2021

Locally Weighted Regression: An Approach to Regression Analysis by Local Fitting

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Optimized LOWESS normalization parameter selection for DNA microarray data

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Ratio-based decisions and the quantitative analysis of cDNA microarray images

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Microarray data normalization and transformation

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

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Singular value decomposition for genome-wide expression data processing and modeling

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7 January 2021

Molecular characterisation of soft tissue tumours: a gene expression study

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Missing value estimation methods for DNA microarrays

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7 January 2021

A Bayesian missing value estimation method for gene expression profile data

1 reference

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7 January 2021

Missing-value estimation using linear and non-linear regression with Bayesian gene selection

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7 January 2021

LSimpute: accurate estimation of missing values in microarray data with least squares methods

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7 January 2021

Missing value estimation for DNA microarray gene expression data: local least squares imputation

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7 January 2021

DNA microarray data imputation and significance analysis of differential expression

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Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens

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Use of proteomic patterns in serum to identify ovarian cancer

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7 January 2021

Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data

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An Automated Peak Identification/Calibration Procedure for High-Dimensional Protein Measures From Mass Spectrometers

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Improving feature detection and analysis of surface-enhanced laser desorption/ionization-time of flight mass spectra

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Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization

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7 January 2021

Improved method for peak picking in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

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7 January 2021

Database resources of the National Center for Biotechnology Information

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7 January 2021

Cluster analysis and display of genome-wide expression patterns

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7 January 2021

Systematic determination of genetic network architecture

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7 January 2021

Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering

1 reference

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7 January 2021

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

1 reference

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7 January 2021

Analysis of gene expression data using self-organizing maps

1 reference

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7 January 2021

Computational analysis of microarray data

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Fundamentals of cDNA microarray data analysis

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7 January 2021

The use and analysis of microarray data

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7 January 2021

Analysis of large-scale gene expression data

1 reference

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7 January 2021

Open source clustering software

1 reference

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7 January 2021

TM4: a free, open-source system for microarray data management and analysis

1 reference

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7 January 2021

Genesis: cluster analysis of microarray data

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7 January 2021

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

1 reference

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Significance analysis of microarrays applied to the ionizing radiation response

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7 January 2021

Orchestrated response: a symphony of transcription factors for gene control

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7 January 2021

Transcription regulation and animal diversity

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7 January 2021

The Eukaryotic Promoter Database (EPD): recent developments

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7 January 2021

The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Searching for regulatory elements in human noncoding sequences.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Human-mouse genome comparisons to locate regulatory sites

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Conserved noncoding sequences are reliable guides to regulatory elements.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Discovery of regulatory elements by a computational method for phylogenetic footprinting

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

FootPrinter: A program designed for phylogenetic footprinting

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7 January 2021

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

ConSite: web-based prediction of regulatory elements using cross-species comparison

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

rVISTA 2.0: evolutionary analysis of transcription factor binding sites

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7 January 2021

CisOrtho: a program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting

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7 January 2021

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes

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7 January 2021

CORG: a database for COmparative Regulatory Genomics

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7 January 2021

Comparative promoter region analysis powered by CORG

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7 January 2021

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes

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7 January 2021

The MAPPER database: a multi-genome catalog of putative transcription factor binding sites

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7 January 2021

CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets

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7 January 2021

DNA binding sites: representation and discovery

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7 January 2021

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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7 January 2021

TRANSFAC: transcriptional regulation, from patterns to profiles

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7 January 2021

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

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7 January 2021

Sequence logos: a new way to display consensus sequences

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7 January 2021

A statistical analysis of the TRANSFAC database.

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7 January 2021

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7 January 2021

MATCH: A tool for searching transcription factor binding sites in DNA sequences

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7 January 2021

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

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7 January 2021

MatInspector and beyond: promoter analysis based on transcription factor binding sites

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7 January 2021

TFBS: Computational framework for transcription factor binding site analysis

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7 January 2021

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

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7 January 2021

Gibbs Recursive Sampler: finding transcription factor binding sites

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A probabilistic method to detect regulatory modules.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Discovery of sequence motifs related to coexpression of genes using evolutionary computation

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7 January 2021

YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation

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7 January 2021

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Toucan: deciphering the cis-regulatory logic of coregulated genes.

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7 January 2021

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

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7 January 2021

Core promoters: active contributors to combinatorial gene regulation

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Combining phylogenetic data with co-regulated genes to identify regulatory motifs

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Detection of coregulation in differential gene expression profiles

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors

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7 January 2021

MSCAN: identification of functional clusters of transcription factor binding sites

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7 January 2021

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Discrete simulation of regulatory homo- and heterodimerization in the apoptosis effector phase.

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7 January 2021

Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX.

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7 January 2021

Gene ontology: tool for the unification of biology

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7 January 2021

Creating the gene ontology resource: design and implementation

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7 January 2021

PANTHER: a library of protein families and subfamilies indexed by function

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7 January 2021

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification

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7 January 2021

The PANTHER database of protein families, subfamilies, functions and pathways

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7 January 2021

OntoBlast function: From sequence similarities directly to potential functional annotations by ontology terms

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7 January 2021

Automated Gene Ontology annotation for anonymous sequence data

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GOblet: a platform for Gene Ontology annotation of anonymous sequence data

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

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7 January 2021

Profiling Gene Expression Using Onto-Express

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GoMiner: a resource for biological interpretation of genomic and proteomic data

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7 January 2021

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GeneMerge—post-genomic analysis, data mining, and hypothesis testing

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GOToolBox: functional analysis of gene datasets based on Gene Ontology

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

OntologyTraverser: an R package for GO analysis.

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Ontological analysis of gene expression data: current tools, limitations, and open problems

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

The KEGG databases at GenomeNet

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7 January 2021

Reactome: a knowledgebase of biological pathways

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

DIP: the database of interacting proteins

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7 January 2021

The Database of Interacting Proteins: 2004 update

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7 January 2021

BIND: the Biomolecular Interaction Network Database

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7 January 2021

MINT: a Molecular INTeraction database

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7 January 2021

IntAct: an open source molecular interaction database

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Human protein reference database as a discovery resource for proteomics

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Online predicted human interaction database

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

The Molecular Biology Database Collection: 2005 update

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

PubMed Central: The GenBank of the published literature

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7 January 2021

A gene network for navigating the literature

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

CoPub Mapper: mining MEDLINE based on search term co-publication

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https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

An architecture for biological information extraction and representation.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Osprey: a network visualization system

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

VisANT: data-integrating visual framework for biological networks and modules

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Linking the genes: inferring quantitative gene networks from microarray data

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Intervention in context-sensitive probabilistic Boolean networks

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

External control in Markovian genetic regulatory networks: the imperfect information case.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

An empirical Bayes approach to inferring large-scale gene association networks.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Identifying periodically expressed transcripts in microarray time series data

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Reverse engineering of genetic networks with Bayesian networks

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Discovery of meaningful associations in genomic data using partial correlation coefficients

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

New methods for joint analysis of biological networks and expression data

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

ToPNet--an application for interactive analysis of expression data and biological networks

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Reverse engineering of regulatory networks: simulation studies on a genetic algorithm approach for ranking hypotheses.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Outer membranes of gram-negative bacteria. XIX. Isolation from Pseudomonas aeruginosa PAO1 and use in reconstitution and definition of the permeability barrier

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Use of fluorescent-protein tagging to determine the subcellular localization of mycoplasma pneumoniae proteins encoded by the cytadherence regulatory locus.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Subcellular localization of the Agrobacterium tumefaciens T-DNA transport pore proteins: VirB8 is essential for the assembly of the transport pore

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Correlation of the amino acid composition of a protein to its structural and biological characters

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting protein subcellular localization: past, present, and future.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Using neural networks for prediction of the subcellular location of proteins

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Using neural networks for prediction of subcellular location of prokaryotic and eukaryotic proteins.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Support vector machine approach for protein subcellular localization prediction

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of protein subcellular locations using Markov chain models

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of protein subcellular locations using fuzzy k-NN method

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Relation between amino acid composition and cellular location of proteins.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Computational method to predict mitochondrially imported proteins and their targeting sequences

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Extensive feature detection of N-terminal protein sorting signals

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Finding nuclear localization signals

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting protein cellular localization using a domain projection method

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

SMART: a web-based tool for the study of genetically mobile domains

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting subcellular localization of proteins using machine-learned classifiers

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Sequence conserved for subcellular localization

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting subcellular localization via protein motif co-occurrence

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A knowledge base for predicting protein localization sites in eukaryotic cells

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

PSLpred: prediction of subcellular localization of bacterial proteins

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

The Universal Protein Resource (UniProt): an expanding universe of protein information

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Human housekeeping genes are compact

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Housekeeping genes as internal standards in cancer research

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Housekeeping proteins: a preliminary study illustrating some limitations as useful references in protein expression studies.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

dbEST--database for "expressed sequence tags"

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GeneNote: whole genome expression profiles in normal human tissues

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Database of mRNA gene expression profiles of multiple human organs

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Proteomic research: potential opportunities for clinical and physiological investigators.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Reg1p targets protein phosphatase 1 to dephosphorylate hexokinase II in Saccharomyces cerevisiae: characterizing the effects of a phosphatase subunit on the yeast proteome

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of Human Protein Function from Post-translational Modifications and Localization Features

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of solvent accessibility and sites of deleterious mutations from protein sequence.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Accurate prediction of solvent accessibility using neural networks-based regression.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

NETASA: neural network based prediction of solvent accessibility.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Real value prediction of solvent accessibility from amino acid sequence.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting surface exposure of amino acids from protein sequence

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of coordination number and relative solvent accessibility in proteins.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Conservation and prediction of solvent accessibility in protein families

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Predicting solvent accessibility: higher accuracy using Bayesian statistics and optimized residue substitution classes.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

New method for accurate prediction of solvent accessibility from protein sequence.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of protein surface accessibility with information theory.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Prediction of protein solvent accessibility using support vector machines.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

The bottom line for prediction of residue solvent accessibility.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Protein conformational prediction

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A critical evaluation of methods for prediction of protein secondary structures

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Protein secondary structure prediction based on position-specific scoring matrices

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Review: protein secondary structure prediction continues to rise.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

JPred: a consensus secondary structure prediction server

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Molecular dynamics simulations in biology

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Knowledge-based potentials for proteins

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Assessment of the CASP4 fold recognition category

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

LiveBench-1: continuous benchmarking of protein structure prediction servers

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

EVA: continuous automatic evaluation of protein structure prediction servers.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

BEPITOPE: predicting the location of continuous epitopes and patterns in proteins

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

T-cell epitope prediction with combinatorial peptide libraries

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A data integration methodology for systems biology

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A data integration methodology for systems biology: experimental verification

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Integrative analysis of the cancer transcriptome

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A molecular signature of metastasis in primary solid tumors

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

A comprehensive transcript index of the human genome generated using microarrays and computational approaches

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Distribution of NF-kappaB-binding sites across human chromosome 22

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Detection and measurement of alternative splicing using splicing-sensitive microarrays.

1 reference

https://api.crossref.org/works/10.1002%2FELPS.200600064

7 January 2021

Identifiers

DOI

10.1002/ELPS.200600064

1 reference

28 June 2017

1 reference