Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data (Q31037081)

12 October 2017

Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data (English)

1 reference

approximate Bayesian computation

12 October 2017

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1 reference

3

1 reference

12 October 2017

Andrew R Francis

2

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author name string

Mark M Tanaka

series ordinal

1

1 reference

PMCID

1526704

12 October 2017

S A Sisson

series ordinal

4

1 reference

PMCID

1526704

12 October 2017

language of work or name

English

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publication date

19 April 2006

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12 October 2017

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12 October 2017

173

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12 October 2017

3

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12 October 2017

1511-1520

1 reference

Likelihoods from summary statistics: recent divergence between species.

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Bayesian estimation of recent migration rates after a spatial expansion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Comparative evaluation of a new effective population size estimator based on approximate bayesian computation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Markov chain Monte Carlo without likelihoods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Approximate Bayesian computation in population genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Calculation of the stability of the IS6110 banding pattern in patients with persistent Mycobacterium tuberculosis disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Maximum likelihood estimation of recombination rates from population data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Lifetime risks, incubation period, and serial interval of tuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Inference of population structure using multilocus genotype data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Stability of Mycobacterium tuberculosis IS6110 restriction fragment length polymorphism patterns and spoligotypes determined by analyzing serial isolates from patients with drug-resistant tuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

The long-term dynamics of tuberculosis and other diseases with long serial intervals: implications of and for changing reproduction numbers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Quantifying the intrinsic transmission dynamics of tuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Modelling the annual risk of tuberculosis infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Inferring coalescence times from DNA sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

The intrinsic transmission dynamics of tuberculosis epidemics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

The sampling theory of selectively neutral alleles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

IS6110: Conservation of sequence in the Mycobacterium tuberculosis complex and its utilization in DNA fingerprinting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Integrating genealogy and epidemiology: the ancestral infection and selection graph as a model for reconstructing host virus histories.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Genetic analysis of complex demographic scenarios: spatially expanding populations of the cane toad, Bufo marinus.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

Transmission of Tuberculosis in New York City -- An Analysis by DNA Fingerprinting and Conventional Epidemiologic Methods

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526704

The control of copy number of IS6110 in Mycobacterium tuberculosis

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16624908

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of rate of change of IS6110 RFLP patterns of Mycobacterium tuberculosis based on serial patient isolates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16624908

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Methods of quantifying and visualising outbreaks of tuberculosis using genotypic information

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16624908

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1111/J.1471-8286.2005.01155.X

Identifiers

DOI

10.1534/GENETICS.106.055574

1 reference

12 October 2017

1 reference

12 October 2017

1 reference

PMCID

1526704