Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster (Q31035102)

14 August 2017

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster (English)

1 reference

14 August 2017

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Drosophila melanogaster

0 references

1 reference

Zhen-Xia Chen

3

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author name string

Yanzhu Lin

1

1 reference

14 August 2017

Kseniya Golovnina

2

1 reference

14 August 2017

Hang Noh Lee

4

1 reference

14 August 2017

Yazmin L Serrano Negron

5

1 reference

14 August 2017

Hina Sultana

6

1 reference

14 August 2017

Brian Oliver

7

1 reference

14 August 2017

Susan T Harbison

8

1 reference

14 August 2017

language of work or name

English

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publication date

5 January 2016

1 reference

14 August 2017

1 reference

14 August 2017

17

1 reference

14 August 2017

28

1 reference

describes a project that uses

14 August 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4702322

based on heuristic

inferred from PubMed Central ID database lookup

DESeq2

object named as

DESeq2

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

1 reference

https://scigraph.springernature.com/pub.10.1186/s12864-015-2353-z

0 references

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PROPER: comprehensive power evaluation for differential expression using RNA-seq

14 July 2018

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Population- and sex-biased gene expression in the excretion organs of Drosophila melanogaster

14 July 2018

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Normalization of RNA-seq data using factor analysis of control genes or samples

14 July 2018

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Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines

14 July 2018

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RNA-seq differential expression studies: more sequence or more replication?

14 July 2018

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FlyBase 102--advanced approaches to interrogating FlyBase

14 July 2018

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Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

14 July 2018

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A comparison of methods for differential expression analysis of RNA-seq data

14 July 2018

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Revisiting global gene expression analysis

14 July 2018

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

14 July 2018

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14 July 2018

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Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

14 July 2018

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Differential expression--the next generation and beyond

14 July 2018

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A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq

14 July 2018

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Synthetic spike-in standards for RNA-seq experiments

14 July 2018

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RNA-seq: technical variability and sampling.

14 July 2018

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Microarrays, deep sequencing and the true measure of the transcriptome

14 July 2018

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Differential expression analysis for sequence count data

14 July 2018

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Cloud-scale RNA-sequencing differential expression analysis with Myrna

14 July 2018

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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

14 July 2018

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Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset

14 July 2018

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Independent filtering increases detection power for high-throughput experiments

14 July 2018

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A scaling normalization method for differential expression analysis of RNA-seq data

14 July 2018

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Expression in aneuploid Drosophila S2 cells

14 July 2018

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

14 July 2018

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

14 July 2018

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The Sequence Alignment/Map format and SAMtools

14 July 2018

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Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

14 July 2018

1 reference

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Systems genetics of complex traits in Drosophila melanogaster

14 July 2018

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Inferences and Power Analysis Concerning Two Negative Binomial Distributions with An Application to MRI Lesion Counts Data

14 July 2018

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

14 July 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

14 July 2018

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

14 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

14 July 2018

1 reference

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Constraint and turnover in sex-biased gene expression in the genus Drosophila

14 July 2018

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Moderated statistical tests for assessing differences in tag abundance

14 July 2018

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Waking experience affects sleep need in Drosophila

14 July 2018

1 reference

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

14 July 2018

1 reference

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Quantitative genomics of starvation stress resistance in Drosophila

14 July 2018

1 reference

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702322

Paucity of genes on the Drosophila X chromosome showing male-biased expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702322

Multiple-laboratory comparison of microarray platforms

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-2353-Z

Gene expression during the life cycle of Drosophila melanogaster.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-2353-Z

The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-015-2353-Z

Sex-dependent gene expression and evolution of the Drosophila transcriptome

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26732976

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-2353-Z

1 reference

Dimensions Publication ID

14 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-2353-z

1 reference

14 August 2017

1 reference