A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data (Q30967031)

14 August 2017

A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data (English)

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magnetic resonance imaging

14 August 2017

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author name string

Evan Calabrese

1

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14 August 2017

Alexandra Badea

2

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14 August 2017

Gary Cofer

3

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14 August 2017

Yi Qi

4

1 reference

14 August 2017

G Allan Johnson

5

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14 August 2017

5 June 2015

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14 August 2017

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14 August 2017

25

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14 August 2017

11

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14 August 2017

4628-4637

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Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: time well spent?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

A mesoscale connectome of the mouse brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Diffusion tensor imaging reveals white matter injury in a rat model of repetitive blast-induced traumatic brain injury

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

A developmental ontology for the mammalian brain based on the prosomeric model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Diffusion tensor magnetic resonance histology reveals microstructural changes in the developing rat brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Mapping remodeling of thalamocortical projections in the living reeler mouse brain by diffusion tractography

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Diffusion-weighted magnetic resonance imaging detection of basal forebrain cholinergic degeneration in a mouse model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

A DTI tractography analysis of infralimbic and prelimbic connectivity in the mouse using high-throughput MRI.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

A multidimensional magnetic resonance histology atlas of the Wistar rat brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Wanted dead or alive? The tradeoff between in-vivo versus ex-vivo MR brain imaging in the mouse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Serial two-photon tomography for automated ex vivo mouse brain imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

High-resolution fiber tract reconstruction in the human brain by means of three-dimensional polarized light imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

A simple scheme for generating nearly uniform distribution of antipodally symmetric points on the unit sphere

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Extremely efficient and deterministic approach to generating optimal ordering of diffusion MRI measurements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

A reproducible evaluation of ANTs similarity metric performance in brain image registration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Waxholm space: an image-based reference for coordinating mouse brain research.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Brain connectivity is not only lower but different in schizophrenia: a combined anatomical and functional approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Is the ADHD brain wired differently? A review on structural and functional connectivity in attention deficit hyperactivity disorder

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Generalized q-sampling imaging.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Comparative mouse brain tractography of diffusion magnetic resonance imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

The human brain in numbers: a linearly scaled-up primate brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Diffusion spectrum magnetic resonance imaging (DSI) tractography of crossing fibers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Morphometric analysis of the C57BL/6J mouse brain.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Formalin fixation alters water diffusion coefficient magnitude but not anisotropy in infarcted brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

21 June 2018

Mapping brain asymmetry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

In vivo neuronal tract tracing using manganese-enhanced magnetic resonance imaging.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

The projections of the ventral tegmental area and adjacent regions: a combined fluorescent retrograde tracer and immunofluorescence study in the rat.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Massive retinotectal projection in rats.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Characterization and propagation of uncertainty in diffusion-weighted MR imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Multiple-mouse neuroanatomical magnetic resonance imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

An ex vivo imaging pipeline for producing high-quality and high-resolution diffusion-weighted imaging datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Polarized light imaging of white matter architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Diffusion tensor tractography reveals abnormal topological organization in structural cortical networks in Alzheimer's disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Determination of the appropriate b value and number of gradient directions for high-angular-resolution diffusion-weighted imaging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Differential projections of the infralimbic and prelimbic cortex in the rat

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Diffusion tensor tractography reveals disrupted structural connectivity in childhood absence epilepsy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FCERCOR%2FBHV121

Cellular mechanisms of infralimbic and prelimbic prefrontal cortical inhibition and dopaminergic modulation of basolateral amygdala neurons in vivo.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4715247

25 November 2018

Identifiers

DOI

10.1093/CERCOR/BHV121

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14 August 2017

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14 August 2017

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