Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia (Q30951026)

24 September 2017

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia (English)

1 reference

24 September 2017

0 references

0 references

6

1 reference

24 September 2017

41

1 reference

24 September 2017

Hidemasa Bono

11

0 references

Christine A Wells

Christine Wells

36

0 references

David A Hume

David A Hume

37

0 references

Piero Carninci

Piero Carninci

1

0 references

Junji Hirota

Junji Hirota

42

0 references

Atsushi Yoshiki

Atsushi Yoshiki

24

0 references

Yoshihide Hayashizaki

47

Yoshihide Hayashizaki

1 reference

24 September 2017

35

Paul Lyons

1 reference

24 September 2017

26

Stefano Gustincich

1 reference

24 September 2017

43

Peter Mombaerts

1 reference

24 September 2017

28

William Pavan

1 reference

24 September 2017

Michelle L Brinkmeier

40

Michelle Brinkmeier

1 reference

24 September 2017

12

Shinji Kondo

1 reference

24 September 2017

14

Rintaro Saito

1 reference

24 September 2017

2

Kazunori Waki

1 reference

24 September 2017

8

Takahiro Arakawa

1 reference

24 September 2017

16

Shiro Fukuda

1 reference

24 September 2017

4

Hideaki Konno

1 reference

24 September 2017

38

Michela Fagiolini

1 reference

24 September 2017

18

Akira Watahiki

1 reference

24 September 2017

7

Katsunori Aizawa

1 reference

24 September 2017

9

Yoshiyuki Ishii

1 reference

24 September 2017

15

Naoki Osato

1 reference

24 September 2017

22

Ayako Yasunishi

1 reference

24 September 2017

27

Kirk Beisel

1 reference

24 September 2017

29

Vassilis Aidinis

1 reference

24 September 2017

39

Takao K Hensch

1 reference

24 September 2017

44

Masami Muramatsu

1 reference

24 September 2017

45

Yasushi Okazaki

1 reference

24 September 2017

33

Tomohiro Kono

1 reference

24 September 2017

Toshiyuki Shiraki

3

1 reference

24 September 2017

Kazuhiro Shibata

5

1 reference

24 September 2017

Daisuke Sasaki

10

1 reference

24 September 2017

Yuichi Sugahara

13

1 reference

24 September 2017

Kenjiro Sato

17

1 reference

24 September 2017

Mari Nakamura

20

1 reference

24 September 2017

Yuko Shibata

21

1 reference

24 September 2017

Noriko Kikuchi

23

1 reference

24 September 2017

Moriaki Kusakabe

25

1 reference

24 September 2017

Akira Nakagawara

30

1 reference

24 September 2017

William A Held

31

1 reference

24 September 2017

Hiroo Iwata

32

1 reference

24 September 2017

Hiromitsu Nakauchi

34

1 reference

24 September 2017

Jun Kawai

46

1 reference

24 September 2017

1 June 2003

1 reference

24 September 2017

1 reference

24 September 2017

13

1 reference

24 September 2017

1273-1289

1 reference

24 September 2017

6B

1 reference

The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Comprehensive analysis of the mouse metabolome based on the transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

A Drosophila full-length cDNA resource

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

An anatomy of normal and malignant gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Long-range heterogeneity at the 3' ends of human mRNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Extra-long first-strand cDNA synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Stromal effects on mammary gland development and breast cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Large-scale transcriptional activity in chromosomes 21 and 22

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Identification and characterization of the potential promoter regions of 1031 kinds of human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Functional annotation of a full-length mouse cDNA collection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

A premature-termination mutation in the Mus musculus cyclin-dependent kinase 3 gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

cDNA detection and analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

The Mouse Gene Expression Database (GXD).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Patterns of variant polyadenylation signal usage in human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Analysis of expressed sequence tags indicates 35,000 human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

The DNA sequence of human chromosome 21

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Screening poly(dA/dT)- cDNAs for gene identification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

The DNA sequence of human chromosome 22

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

High-efficiency full-length cDNA cloning

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Automated filtration-based high-throughput plasmid preparation system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

An encyclopedia of mouse genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

High efficiency selection of full-length cDNA by improved biotinylated cap trapper.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

High-efficiency full-length cDNA cloning by biotinylated CAP trapper

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Generation and analysis of 280,000 human expressed sequence tags

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Normalization and subtraction: two approaches to facilitate gene discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

3'-end cleavage and polyadenylation of mRNA precursors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

A simple and very efficient method for generating cDNA libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Lambda ZAP: a bacteriophage lambda expression vector with in vivo excision properties

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Complementary DNA sequencing: expressed sequence tags and human genome project

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Significance of rare m RNA sequences in liver

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Molecular analysis of gene expression in the developing pontocerebellar projection system.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

Verification and initial annotation of the NIA mouse 15K cDNA clone set.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=403712

How to count ... human genes

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12819125

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel Genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12819125

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cytoplasmic RNA extraction from fresh and frozen mammalian tissues

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12819125

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.1119703

1 reference

24 September 2017

1 reference

24 September 2017

1 reference