Elucidation and Characterization of Oligonucleotide-Accessible Sites on HIV-2 Leader Region RNA (Q30915689)

12 October 2017

Elucidation and Characterization of Oligonucleotide-Accessible Sites on HIV-2 Leader Region RNA (English)

1 reference

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https://api.crossref.org/works/10.1089/108729003764097331

five prime untranslated region

23 December 2023

main subject

1 reference

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23 December 2023

1 reference

https://api.crossref.org/works/10.1089/108729003764097331

23 December 2023

1 reference

https://api.crossref.org/works/10.1089/108729003764097331

23 December 2023

4

J. Stephen Lodmell

1 reference

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23 December 2023

author name string

Boramee Douk

series ordinal

2

1 reference

12 October 2017

Jean-Marc Lanchy

series ordinal

3

1 reference

12 October 2017

Emily L. Deer

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12691535

23 December 2023

language of work or name

English

1 reference

National Center for Biotechnology Information

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23 December 2023

publication date

1 February 2003

1 reference

full work available at URL

12 October 2017

https://europepmc.org/articles/pmc1403296?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

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https://europepmc.org/articles/PMC1403296

23 December 2023

1 reference

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https://europepmc.org/articles/PMC1403296?pdf=render

23 December 2023

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12691535

https://doi.org/10.1089/108729003764097331

23 December 2023

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12691535

http://www.liebertpub.com/doi/pdf/10.1089/108729003764097331

23 December 2023

1 reference

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https://api.crossref.org/works/10.1089/108729003764097331

23 December 2023

1 reference

12 October 2017

13

1 reference

12 October 2017

1

1 reference

12 October 2017

45-55

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Elements located upstream and downstream of the major splice donor site influence the ability of HIV-2 leader RNA to dimerize in vitro

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Regulated HIV-2 RNA dimerization by means of alternative RNA conformations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Human immunodeficiency virus type 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus, type 2 RNA genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Mapping of RNA accessible sites by extension of random oligonucleotide libraries with reverse transcriptase.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

In vitro selection supports the view of a kinetic control of antisense RNA-mediated inhibition of gene expression in mammalian cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

RNA mapping: selection of potent oligonucleotide sequences for antisense experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Infectious molecular clones with the nonhomologous dimer initiation sequences found in different subtypes of human immunodeficiency virus type 1 can recombine and initiate a spreading infection in vitro.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Mutational analysis of the 5' noncoding region of human immunodeficiency virus type 1 genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Role of the DIS hairpin in replication of human immunodeficiency virus type 1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Secondary structure of the HIV-2 leader RNA comprising the tRNA-primer binding site

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1403296

Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries

25 November 2018

1 reference

12 December 2020

Variant effects of non-native kissing-loop hairpin palindromes on HIV replication and HIV RNA dimerization: role of stem-loop B in HIV replication and HIV RNA dimerization

1 reference

12 December 2020

Identification of thein VitroHIV-2/SIV RNA Dimerization Site Reveals Striking Differences with HIV-1

1 reference

12 December 2020

Alternate usage of two dimerization initiation sites in HIV-2 viral RNA in vitro

1 reference

12 December 2020

Functional significance of the dinucleotide bulge in stem-loop1 and stem-loop2 of HIV-2 TAR RNA

1 reference

12 December 2020

Journal of Molecular Biology

23

72

3991

ST. LOUIS D.

1998

1 reference

Crossref

https://api.crossref.org/works/10.1089/108729003764097331

23 December 2023

Identifiers

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release_zb4f3fukhbff3fiiytgjwdil24

12 October 2017

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Fatcat

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24 November 2022

mapped directly with Wikidata item

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12 October 2017

1 reference