Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data (Q30887494)

12 October 2017

Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data (English)

1 reference

12 October 2017

0 references

0 references

31

1 reference

Lynnette Fernandez-Cuesta

12 October 2017

Lynnette Fernandez-Cuesta

1

0 references

Joachim H Clement

Joachim H Clement

28

0 references

Martin Peifer

Martin Peifer

7

0 references

Stefan Haas

Stefan A Haas

39

0 references

Gavin Wright

Gavin M Wright

24

0 references

Peter Nürnberg

18

Peter Nürnberg

1 reference

12 October 2017

32

Steinar Solberg

1 reference

12 October 2017

37

Martin Vingron

1 reference

12 October 2017

36

Elisabeth Brambilla

1 reference

12 October 2017

17

Christian Becker

1 reference

ORCID Public Data File 2021

12 October 2017

1 reference

Johannes M Heuckmann

9

Johannes M Heuckmann

1 reference

12 October 2017

3

Roopika Menon

1 reference

12 October 2017

20

Diana Böhm

1 reference

12 October 2017

15

Roland T Ullrich

1 reference

12 October 2017

10

Frauke Leenders

1 reference

12 October 2017

14

Jakob Schöttle

1 reference

12 October 2017

8

Dennis Plenker

1 reference

12 October 2017

11

Thomas Zander

1 reference

12 October 2017

13

Mirjam Koker

1 reference

12 October 2017

22

Sascha Ansén

1 reference

12 October 2017

2

Ruping Sun

1 reference

12 October 2017

12

Ilona Dahmen

1 reference

12 October 2017

27

Iver Petersen

1 reference

12 October 2017

33

Marius Lund-Iversen

1 reference

12 October 2017

38

Sven Perner

1 reference

12 October 2017

Julie George

4

1 reference

12 October 2017

Susanne Lorenz

5

1 reference

12 October 2017

Leonardo A Meza-Zepeda

6

1 reference

12 October 2017

Henrik Seidel

19

1 reference

12 October 2017

Friederike Göke

21

1 reference

12 October 2017

Prudence A Russell

23

1 reference

12 October 2017

Zoe Wainer

25

1 reference

12 October 2017

Benjamin Solomon

26

1 reference

12 October 2017

Jörg Sänger

29

1 reference

12 October 2017

Odd-Terje Brustugun

30

1 reference

12 October 2017

Reinhard Buettner

34

1 reference

12 October 2017

Jürgen Wolf

35

1 reference

12 October 2017

Roman K Thomas

40

1 reference

12 October 2017

5 January 2015

1 reference

12 October 2017

1 reference

12 October 2017

16

1 reference

12 October 2017

7

1 reference

Creative Commons Attribution 4.0 International

12 October 2017

start time

5 January 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s13059-014-0558-0

0 references

cites work

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

STAR: ultrafast universal RNA-seq aligner

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Computational methods for transcriptome annotation and quantification using RNA-seq

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Inactivating mutations of acetyltransferase genes in B-cell lymphoma

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Anaplastic lymphoma kinase inhibition in non-small-cell lung cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

The RASSF8 candidate tumor suppressor inhibits cell growth and regulates the Wnt and NF-kappaB signaling pathways.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

ERG rearrangement is specific to prostate cancer and does not occur in any other common tumor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

The biology and treatment of EML4-ALK non-small cell lung cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Fast and SNP-tolerant detection of complex variants and splicing in short reads

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

The N-terminal RASSF family: a new group of Ras-association-domain-containing proteins, with emerging links to cancer formation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Chimeric transcript discovery by paired-end transcriptome sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

Identification of RASSF8 as a candidate lung tumor suppressor gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

BLAT—The BLAST-Like Alignment Tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

The chronic myelogenous leukemia-specific P210 protein is the product of the bcr/abl hybrid gene

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4300615

10.1186/S13059-014-0558-0

14 July 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

12 October 2017

0 references

1 reference

12 October 2017

1 reference