Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes (Q30884913)

20 August 2017

Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes (English)

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20 August 2017

5

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27 June 2017

Yeşim Soyer

1

1 reference

20 August 2017

Renato H Orsi

series ordinal

2

1 reference

20 August 2017

Lorraine D Rodriguez-Rivera

series ordinal

3

1 reference

20 August 2017

Qi Sun

series ordinal

4

1 reference

20 August 2017

14 November 2009

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20 August 2017

BMC Evolutionary Biology

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20 August 2017

9

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20 August 2017

264

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https://scigraph.springernature.com/pub.10.1186/1471-2148-9-264

20 August 2017

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The role of horizontal gene transfer in the evolution of selected foodborne bacterial pathogens

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Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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A severe Salmonella enterica serotype Paratyphi B infection in a child related to a pet turtle, Trachemys scripta elegans.

21 June 2018

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Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

21 June 2018

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Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands.

21 June 2018

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A simple and robust statistical test for detecting the presence of recombination

21 June 2018

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Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

21 June 2018

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Distribution of "classic" virulence factors among Salmonella spp.

21 June 2018

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A scan for positively selected genes in the genomes of humans and chimpanzees

21 June 2018

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Discrimination within phenotypically closely related definitive types of Salmonella enterica serovar typhimurium by the multiple amplification of phage locus typing technique

21 June 2018

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21 June 2018

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Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid

21 June 2018

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Identification of host-specific colonization factors of Salmonella enterica serovar Typhimurium.

21 June 2018

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

21 June 2018

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Characterization of Salmonella enterica subspecies I genovars by use of microarrays

21 June 2018

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Strong positive selection and recombination drive the antigenic variation of the PilE protein of the human pathogen Neisseria meningitidis

21 June 2018

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Pathogenicity islands in bacterial pathogenesis

21 June 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 June 2018

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Lateral gene transfer in Salmonella

21 June 2018

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Statistical significance for genomewide studies

21 June 2018

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Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

21 June 2018

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Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old.

21 June 2018

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Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18

21 June 2018

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The Salmonella enterica subspecies I specific centisome 7 genomic island encodes novel protein families present in bacteria living in close contact with eukaryotic cells

21 June 2018

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Recombination in evolutionary genomics

21 June 2018

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Phylogenetic evidence for adaptive evolution of dengue viruses in nature.

21 June 2018

1 reference

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Evaluation of methods for detecting recombination from DNA sequences: empirical data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Salmonella effectors within a single pathogenicity island are differentially expressed and translocated by separate type III secretion systems

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Complete genome sequence of Salmonella enterica serovar Typhimurium LT2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

OmpC is the receptor for Gifsy-1 and Gifsy-2 bacteriophages of Salmonella

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Host adapted serotypes of Salmonella enterica

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Pathogenicity islands and the evolution of microbes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

21 June 2018

Salmonella nomenclature.

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Codon-substitution models for heterogeneous selection pressure at amino acid sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Salmonella pathogenicity islands: big virulence in small packages.

21 June 2018

1 reference

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Identification of a pathogenicity island required for Salmonella enteropathogenicity.

21 June 2018

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

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A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

DNA repair is more important than catalase for Salmonella virulence in mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Loss of OmpC porin in a strain of Salmonella typhimurium causes increased resistance to cephalosporins during therapy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Analyzing the mosaic structure of genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA gene family

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Integration of horizontally transferred genes into regulatory interaction networks takes many million years.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Contribution of SPI-4 genes to the virulence of Salmonella enterica.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Foodborne disease trends and reports

25 November 2018

1 reference

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Transmission routes of Salmonella Typhimurium DT 104 between 14 cattle and pig herds in Denmark demonstrated by molecular fingerprinting.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

The temperature-sensing protein TlpA is repressed by PhoP and dispensable for virulence of Salmonella enterica serovar Typhimurium in mice.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

The rate of adaptive evolution in enteric bacteria.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Adaptive evolution and recombination of Rickettsia antigens

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Phylogenetic Evidence for Frequent Positive Selection and Recombination in the Meningococcal Surface Antigen PorB

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Codon bias and base composition are poor indicators of horizontally transferred genes.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

The porin OmpC of Salmonella typhimurium mediates adherence to macrophages.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

Statistical tests for detecting gene conversion.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2784778

25 November 2018

Identifiers

DOI

10.1186/1471-2148-9-264

1 reference

Dimensions Publication ID

20 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2148-9-264

1 reference

20 August 2017

1 reference