Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains (Q30855770)

14 October 2017

Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains (English)

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14 October 2017

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15

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PubMed publication ID

27 June 2017

James Estill

5

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Joachim Messing

object named as

Joachim Messing

14

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Jeffrey L. Bennetzen

17

object named as

Jeffrey L Bennetzen

1 reference

14 October 2017

16

Phillip SanMiguel

1 reference

14 October 2017

2

Meizhong Luo

1 reference

14 October 2017

4

Matt Estep

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14 October 2017

9

David Kudrna

1 reference

14 October 2017

11

Jetty S S Ammiraju

1 reference

14 October 2017

13

Arvind K Bharti

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14 October 2017

12

Kristi Collura

1 reference

14 October 2017

7

Jayson Talag

1 reference

14 October 2017

18

Carol Soderlund

1 reference

14 October 2017

8

Nicholas Sisneros

1 reference

14 October 2017

William Nelson

1

1 reference

14 October 2017

Jianxin Ma

3

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14 October 2017

Ruifeng He

6

1 reference

14 October 2017

HyeRan Kim

10

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14 October 2017

language of work or name

English

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publication date

19 December 2008

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14 October 2017

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14 October 2017

9

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14 October 2017

621

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https://scigraph.springernature.com/pub.10.1186/1471-2164-9-621

14 October 2017

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cites work

Physical and genetic structure of the maize genome reflects its complex evolutionary history

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

A GeneTrek analysis of the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Patterns in grass genome evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Retrotranspositions in orthologous regions of closely related grass species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Uneven chromosome contraction and expansion in the maize genome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Organization and variability of the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Unmethylated CpG islands associated with genes in higher plant DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

21 June 2018

The TIGR Maize Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Structure and architecture of the maize genome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Whole-genome validation of high-information-content fingerprinting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

The map-based sequence of the rice genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

FPC Web tools for rice, maize, and distribution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Consistent over-estimation of gene number in complex plant genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Genome-wide mutagenesis of Zea mays L. using RescueMu transposons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Sequence composition and genome organization of maize.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Pattern of diversity in the genomic region near the maize domestication gene tb1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Enrichment of gene-coding sequences in maize by genome filtration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Maize genome sequencing by methylation filtration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

An Improved Method for Plant BAC Library Construction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

High‐Cot sequence analysis of the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

The generic genome browser: a building block for a model organism system database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Functional annotation of a full-length Arabidopsis cDNA collection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

The MuDR transposon terminal inverted repeat contains a complex plant promoter directing distinct somatic and germinal programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Contigs built with fingerprints, markers, and FPC V4.7.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

FPC: a system for building contigs from restriction fingerprinted clones.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Utility of different gene enrichment approaches toward identifying and sequencing the maize gene space.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2628917

Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19099592

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Methylation of CpG sequences in eukaryotic DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19099592

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sequence specificity of methylation in higher plant DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19099592

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-621

1 reference

Dimensions Publication ID

14 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-621

1 reference

14 October 2017

PubMed publication ID

19099592

1 reference