New glycoproteomics software, GlycoPep Evaluator, generates decoy glycopeptides de novo and enables accurate false discovery rate analysis for small data sets (Q30843574)

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English	New glycoproteomics software, GlycoPep Evaluator, generates decoy glycopeptides de novo and enables accurate false discovery rate analysis for small data sets	scientific article

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scholarly article

1 reference

Europe PubMed Central

12 October 2017

New glycoproteomics software, GlycoPep Evaluator, generates decoy glycopeptides de novo and enables accurate false discovery rate analysis for small data sets (English)

1 reference

Europe PubMed Central

12 October 2017

0 references

author name string

Zhikai Zhu

1

1 reference

Europe PubMed Central

12 October 2017

Xiaomeng Su

2

1 reference

Europe PubMed Central

12 October 2017

Eden P Go

3

1 reference

Europe PubMed Central

12 October 2017

Heather Desaire

4

1 reference

Europe PubMed Central

12 October 2017

language of work or name

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publication date

28 August 2014

1 reference

Europe PubMed Central

12 October 2017

Analytical Chemistry

1 reference

Europe PubMed Central

12 October 2017

86

1 reference

Europe PubMed Central

12 October 2017

18

1 reference

Europe PubMed Central

12 October 2017

9212-9219

1 reference

Europe PubMed Central

12 October 2017

Absolute quantitation of glycosylation site occupancy using isotopically labeled standards and LC-MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Absolute quantitation of immunoglobulin G and its glycoforms using multiple reaction monitoring.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Characterizing O-linked glycopeptides by electron transfer dissociation: fragmentation rules and applications in data analysis

1 reference

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Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search

1 reference

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Automated assignments of N- and O-site specific glycosylation with extensive glycan heterogeneity of glycoprotein mixtures.

1 reference

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21 June 2018

GlycoPep Detector: a tool for assigning mass spectrometry data of N-linked glycopeptides on the basis of their electron transfer dissociation spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Glycopeptide analysis, recent developments and applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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When target-decoy false discovery rate estimations are inaccurate and how to spot instances

1 reference

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21 June 2018

Software for automated interpretation of mass spectrometry data from glycans and glycopeptides

1 reference

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21 June 2018

Fine tuning of cell signals by glycosylation

1 reference

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21 June 2018

GlycoPep grader: a web-based utility for assigning the composition of N-linked glycopeptides

1 reference

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21 June 2018

Effective use of mass spectrometry for glycan and glycopeptide structural analysis

1 reference

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Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database.

1 reference

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Target-decoy approach and false discovery rate: when things may go wrong

1 reference

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Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues

1 reference

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21 June 2018

Glycosylation of surface Ig creates a functional bridge between human follicular lymphoma and microenvironmental lectins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

1 reference

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21 June 2018

Bioinformatics in glycomics: glycan characterization with mass spectrometric data using SimGlycan

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Glycosylation site-specific analysis of clade C HIV-1 envelope proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Characterization of glycopeptides by combining collision-induced dissociation and electron-transfer dissociation mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Maximizing coverage of glycosylation heterogeneity in MALDI-MS analysis of glycoproteins with up to 27 glycosylation sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

21 June 2018

Analysis and validation of proteomic data generated by tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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The evolution of N-glycan-dependent endoplasmic reticulum quality control factors for glycoprotein folding and degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database

1 reference

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Concepts and principles of O-linked glycosylation

1 reference

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Computational framework for identification of intact glycopeptides in complex samples

1 reference

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The effect of glycosylation on the folding kinetics of erythropoietin.

1 reference

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An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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Automated N-glycopeptide identification using a combination of single- and tandem-MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4165450

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Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

1 reference

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Modeling human congenital disorder of glycosylation type IIa in the mouse: conservation of asparagine-linked glycan-dependent functions in mammalian physiology and insights into disease pathogenesis

1 reference

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GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans

1 reference

https://pubmed.ncbi.nlm.nih.gov/25137014

12 December 2020

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Identifiers

10.1021/AC502176N

1 reference

Europe PubMed Central

12 October 2017

1 reference

Europe PubMed Central

12 October 2017

1 reference

Europe PubMed Central

12 October 2017

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