Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome (Q30720040)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

0 references

8

1 reference

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3 March 2020

Qiang Bai

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

John De Vos

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Therese Commes

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

author name string

Nicolas Philippe

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Elias Bou Samra

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Anthony Boureux

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Alban Mancheron

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

Florence Rufflé

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

language of work or name

English

0 references

publication date

18 December 2013

1 reference

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3 March 2020

published in

Nucleic Acids Research

1 reference

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3 March 2020

volume

42

1 reference

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3 March 2020

page(s)

2820-2832

1 reference

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3 March 2020

issue

5

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

3 March 2020

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

CRAC: an integrated approach to the analysis of RNA-seq reads

1 reference

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RNA-Seq: revelation of the messengers

20 June 2018

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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

20 June 2018

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Genomic "dark matter": implications for understanding human disease mechanisms, diagnostics, and cures

20 June 2018

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Dark matter RNA: an intelligent scaffold for the dynamic regulation of the nuclear information landscape

20 June 2018

1 reference

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Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs

20 June 2018

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20 June 2018

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

The evolution of RNAs with multiple functions

20 June 2018

1 reference

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The reality of pervasive transcription

20 June 2018

1 reference

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Dissecting the first transcriptional divergence during human embryonic development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Protocol dependence of sequencing-based gene expression measurements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Most "dark matter" transcripts are associated with known genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Next-generation tag sequencing for cancer gene expression profiling

20 June 2018

1 reference

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Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Evolution and functions of long noncoding RNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Long non-coding RNAs: insights into functions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

A gene expression signature shared by human mature oocytes and embryonic stem cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Transcriptome annotation using tandem SAGE tags

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

What is a gene, post-ENCODE? History and updated definition

20 June 2018

1 reference

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human

20 June 2018

1 reference

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20 June 2018

TUF love for "junk" DNA.

1 reference

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Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

20 June 2018

1 reference

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Transcriptome analysis of monocytic leukemia cell differentiation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Cluster analysis and display of genome-wide expression patterns

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3950697

Molecular biology: RNA discrimination

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT1300

21 January 2018

Identifiers

DOI

10.1093/NAR/GKT1300

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24357408%20AND%20SRC:MED&resulttype=core&format=json