Molecular phylogenetics: state-of-the-art methods for looking into the past (Q30665919)

26 June 2017

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title

Molecular phylogenetics: state-of-the-art methods for looking into the past (English)

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26 June 2017

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3

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26 June 2017

Whelan S

1

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PubMed ID

11335036

26 June 2017

Liò P

series ordinal

2

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26 June 2017

1 May 2001

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26 June 2017

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26 June 2017

17

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26 June 2017

262-272

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26 June 2017

5

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Phylogenetic methods come of age: testing hypotheses in an evolutionary context

26 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Models of Molecular Evolution and Phylogeny: Table 1

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Model of amino acid substitution in proteins encoded by mitochondrial DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Statistical tests of models of DNA substitution.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Estimating the pattern of nucleotide substitution

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Models of amino acid substitution and applications to mitochondrial protein evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Success of maximum likelihood phylogeny inference in the four-taxon case

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Mitochondrial DNA sequences of primates: Tempo and mode of evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Among-site rate variation and its impact on phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Models of protein sequence evolution and their applications.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Statistical methods for detecting molecular adaptation

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

A Stochastic Model for the Evolution of Autocorrelated DNA Sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Combining protein evolution and secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Using protein structural information in evolutionary inference: transmembrane proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

On the consistency of maximum likelihood estimation of phylogenetic trees from nucleotide sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Bayesian statistics in genetics: a guide for the uninitiated

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Loss of information in genetic distances.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Parsimony, likelihood, and the role of models in molecular phylogenetics.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Is the Felsenstein zone a fly trap?

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

NJML: a hybrid algorithm for the neighbor-joining and maximum-likelihood methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Evolutionary trees from DNA sequences: a maximum likelihood approach

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Statistical tests of gamma-distributed rate heterogeneity in models of sequence evolution in phylogenetics

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Likelihood-based tests of topologies in phylogenetics

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

A Likelihood-Ratio Test of Monophyly

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Phylogenetic information and experimental design in molecular systematics.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

Is it better to add taxa or characters to a difficult phylogenetic problem?

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

On the best evolutionary rate for phylogenetic analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0168-9525%2801%2902272-7

7 January 2021

10.1016/S0168-9525(01)02272-7

Identifiers

DOI

1 reference

26 June 2017

1 reference

PubMed ID

11335036