Inferring nucleosome positions with their histone mark annotation from ChIP data (Q30663648)

11 November 2017

Inferring nucleosome positions with their histone mark annotation from ChIP data (English)

1 reference

11 November 2017

2

Martin Vingron

1 reference

11 November 2017

Alessandro Mammana

1

1 reference

PMCID

3789549

11 November 2017

Ho-Ryun Chung

series ordinal

3

1 reference

PMCID

3789549

11 November 2017

language of work or name

English

0 references

publication date

26 August 2013

1 reference

11 November 2017

1 reference

11 November 2017

29

1 reference

11 November 2017

20

1 reference

11 November 2017

2547-2554

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

11 November 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

A map of nucleosome positions in yeast at base-pair resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Expression noise and acetylation profiles distinguish HDAC functions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

The adjustable nucleosome: an epigenetic signaling module

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Probabilistic inference for nucleosome positioning with MNase-based or sonicated short-read data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

A user's guide to the encyclopedia of DNA elements (ENCODE)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Identifying dispersed epigenomic domains from ChIP-Seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

The Polycomb complex PRC2 and its mark in life

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Discovery and characterization of chromatin states for systematic annotation of the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Model-based analysis of ChIP-Seq (MACS)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Genome-wide mapping of in vivo protein-DNA interactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

DNA binding within the nucleosome core

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3789549

Sequence-dependent nucleosome positioning

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT449

nucleR: a package for non-parametric nucleosome positioning.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT449

Human genes with CpG island promoters have a distinct transcription-associated chromatin organization

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT449

10.1093/BIOINFORMATICS/BTT449

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/MammanaVC13

11 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

11 November 2017

1 reference

PMCID

3789549