PTGBase: an integrated database to study tandem duplicated genes in plants (Q30630895)

19 October 2017

PTGBase: an integrated database to study tandem duplicated genes in plants (English)

1 reference

19 October 2017

0 references

Jingyin Yu

1

1 reference

19 October 2017

Tao Ke

2

1 reference

19 October 2017

Sadia Tehrim

3

1 reference

19 October 2017

Fengming Sun

4

1 reference

19 October 2017

Boshou Liao

5

1 reference

19 October 2017

Wei Hua

6

1 reference

19 October 2017

22 March 2015

1 reference

19 October 2017

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19 October 2017

2015

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Creative Commons Attribution 4.0 International

19 October 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species

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The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

20 June 2018

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Genome-wide comparative analysis of NBS-encoding genes between Brassica species and Arabidopsis thaliana

20 June 2018

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Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family

20 June 2018

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Bolbase: a comprehensive genomics database for Brassica oleracea

20 June 2018

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Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants.

20 June 2018

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Impact of whole-genome and tandem duplications in the expansion and functional diversification of the F-box family in legumes (Fabaceae)

20 June 2018

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Genome and gene duplications and gene expression divergence: a view from plants

20 June 2018

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Phytozome: a comparative platform for green plant genomics

20 June 2018

1 reference

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Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

20 June 2018

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The genome of Theobroma cacao

20 June 2018

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The evolution of a high copy gene array in Arabidopsis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

20 June 2018

1 reference

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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

20 June 2018

1 reference

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TRDB--the Tandem Repeats Database

20 June 2018

1 reference

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VNTRDB: a bacterial variable number tandem repeat locus database

20 June 2018

1 reference

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TassDB: a database of alternative tandem splice sites

20 June 2018

1 reference

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20 June 2018

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Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

InterProScan: protein domains identifier

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Plant conserved non-coding sequences and paralogue evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Darwin's abominable mystery: Insights from a supertree of the angiosperms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Dosage sensitivity and the evolution of gene families in yeast

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Initial sequencing and comparative analysis of the mouse genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

STRBase: a short tandem repeat DNA database for the human identity testing community

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

The evolutionary fate and consequences of duplicate genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

The COG database: a tool for genome-scale analysis of protein functions and evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Preservation of duplicate genes by complementary, degenerative mutations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Pseudogenes as a paradigm of neutral evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

Homologues of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAV017

TRbase: a database relating tandem repeats to disease genes for the human genome.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAV017

Highly expressed genes in yeast evolve slowly.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4369376

25 November 2018

Identifiers

DOI

10.1093/DATABASE/BAV017

1 reference

19 October 2017

1 reference

19 October 2017

1 reference