cellPACK: a virtual mesoscope to model and visualize structural systems biology (Q30612366)

13 October 2017

cellPACK: a virtual mesoscope to model and visualize structural systems biology (English)

1 reference

13 October 2017

4

David S Goodsell

1 reference

13 October 2017

Graham T Johnson

1

1 reference

13 October 2017

Ludovic Autin

2

1 reference

13 October 2017

Mostafa Al-Alusi

3

1 reference

13 October 2017

Michel F Sanner

5

1 reference

13 October 2017

Arthur J Olson

6

1 reference

13 October 2017

1 December 2014

1 reference

13 October 2017

1 reference

13 October 2017

12

1 reference

13 October 2017

1

1 reference

13 October 2017

85-91

1 reference

3D molecular models of whole HIV-1 virions generated with cellPACK.

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

uPy: a ubiquitous CG Python API with biological-modeling applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

The frantic play of the concealed HIV envelope cytoplasmic tail.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Maturation-dependent HIV-1 surface protein redistribution revealed by fluorescence nanoscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

C-terminal tail of human immunodeficiency virus gp41: functionally rich and structurally enigmatic

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

The tale of the long tail: the cytoplasmic domain of HIV-1 gp41.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

A whole-cell computational model predicts phenotype from genotype

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

ePMV embeds molecular modeling into professional animation software environments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Classification of electron sub-tomograms with neural networks and its application to template-matching.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Atomic-level modelling of the HIV capsid

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Model for Protein Concentration Gradients in the Cytoplasm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Structural analysis of HIV-1 maturation using cryo-electron tomography

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

An inventory of the bacterial macromolecular components and their spatial organization.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Microfluidics for bacterial chemotaxis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Maximum likelihood based classification of electron tomographic data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Loss of synaptotagmin IV results in a reduction in synaptic vesicles and a distortion of the Golgi structure in cultured hippocampal neurons

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Spatial and temporal coordination of mitosis by Ran GTPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Hypothesis testing via integrated computer modeling and digital fluorescence microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Molecular anatomy of a trafficking organelle

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

UCSF Chimera--a visualization system for exploratory research and analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Stathmin-tubulin interaction gradients in motile and mitotic cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Whither structural biology?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Python: a programming language for software integration and development

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Reduced surface: an efficient way to compute molecular surfaces

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Computer visualization of three-dimensional image data using IMOD

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

The bacterial flagellar motor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

Polarity of flagellar assembly in Chlamydomonas

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4281296

20 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

Miniseries: Illustrating the machinery of life: Eukaryotic cell panorama.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

THE FRACTAL DIMENSION OF THE APOLLONIAN SPHERE PACKING

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

Random-walk-based stochastic modeling of three-dimensional fiber systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

Molecular silverware. I. General solutions to excluded volume constrained problems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

21 January 2018

1 reference

12 December 2020

BROWNIAN DYNAMICS SIMULATION OF MACROMOLECULE DIFFUSION IN A PROTOCELL

1 reference

PubMed

12 December 2020

Random packings of spheres and spherocylinders simulated by mechanical contraction

1 reference

PubMed

12 December 2020

Portrait of a molecule

1 reference

PubMed

12 December 2020

A general advancing front technique for filling space with arbitrary objects

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

7 January 2021

inferred from DOI database lookup

Python for Scientific Computing

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3204

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NMETH.3204

1 reference

Dimensions Publication ID

13 October 2017

0 references

1 reference

13 October 2017

1 reference