virtualArray: a R/bioconductor package to merge raw data from different microarray platforms (Q30596352)

26 September 2017

virtualArray: a R/bioconductor package to merge raw data from different microarray platforms (English)

1 reference

inferred from name or label

26 September 2017

1 reference

7 September 2021

author name string

Andreas Heider

series ordinal

1

1 reference

PMCID

3599117

26 September 2017

Rüdiger Alt

series ordinal

2

1 reference

26 September 2017

2 March 2013

1 reference

26 September 2017

1 reference

26 September 2017

14

1 reference

26 September 2017

75

1 reference

Creative Commons Attribution 2.0 Generic

26 September 2017

start time

2 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3599117

based on heuristic

inferred from PubMed Central ID database lookup

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

GEOquery

object named as

GEOquery

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-75

0 references

cites work

Very small embryonic-like stem cells purified from umbilical cord blood lack stem cell characteristics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Empirical comparison of cross-platform normalization methods for gene expression data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Molecular insights into reprogramming-initiation events mediated by the OSKM gene regulatory network

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Direct reprogramming of somatic cells is promoted by maternal transcription factor Glis1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Cross-platform microarray data normalisation for regulatory network inference

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Differential expression analysis for sequence count data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Tackling the widespread and critical impact of batch effects in high-throughput data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

WebArrayDB: cross-platform microarray data analysis and public data repository

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

GenMiner: mining non-redundant association rules from integrated gene expression data and annotations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

lumi: a pipeline for processing Illumina microarray

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Meta-analysis of microarray results: challenges, opportunities, and recommendations for standardization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

TM4 microarray software suite

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Adjusting batch effects in microarray expression data using empirical Bayes methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Microarray data analysis: from disarray to consolidation and consensus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Combining gene expression data from different generations of oligonucleotide arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Bioconductor: open software development for computational biology and bioinformatics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

affy--analysis of Affymetrix GeneChip data at the probe level

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Diagnosis of multiple cancer types by shrunken centroids of gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3599117

Merging two gene-expression studies via cross-platform normalization.

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-14-75

21 January 2018

Identifiers

DOI

10.1186/1471-2105-14-75

1 reference

26 September 2017

journals/bmcbi/HeiderA13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1045870982

0 references

Fatcat ID

release_tgim5l6eo5emzgszt2jor7hvam

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/tgim5l6eo5emzgszt2jor7hvam

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3599117

1 reference

26 September 2017

1 reference

PMCID

3599117