Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0. (Q30583846)

16 November 2017

Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0. (English)

1 reference

16 November 2017

4

Reinhard Guthke

1 reference

16 November 2017

3

Sebastian Vlaic

1 reference

16 November 2017

Michael Weber

1

1 reference

16 November 2017

Sebastian G Henkel

series ordinal

2

1 reference

16 November 2017

Everardus J van Zoelen

series ordinal

5

1 reference

16 November 2017

Dominik Driesch

series ordinal

6

1 reference

16 November 2017

2 January 2013

1 reference

16 November 2017

1 reference

16 November 2017

7

1 reference

16 November 2017

1

1 reference

describes a project that uses

16 November 2017

limma

object named as

LIMMA

2 references

22 June 2022

https://europepmc.org/article/PMC/3605253

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1752-0509-7-1

0 references

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Genome-Wide Scale-Free Network Inference for Candida albicans

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On the way toward systems biology of Aspergillus fumigatus infection

14 July 2018

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A computational framework for gene regulatory network inference that combines multiple methods and datasets

14 July 2018

1 reference

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Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells

14 July 2018

1 reference

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Identification of SOX9 interaction sites in the genome of chondrocytes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Osteo-transcriptomics of human mesenchymal stem cells: accelerated gene expression and osteoblast differentiation induced by vitamin D reveals c-MYC as an enhancer of BMP2-induced osteogenesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Transcriptional networks controlling skeletal development

14 July 2018

1 reference

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Integrative modeling of transcriptional regulation in response to antirheumatic therapy

14 July 2018

1 reference

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TGF-beta signaling in chondrocyte terminal differentiation and osteoarthritis: modulation and integration of signaling pathways through receptor-Smads

14 July 2018

1 reference

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Sox9 directly promotes Bapx1 gene expression to repress Runx2 in chondrocytes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Gene regulatory network inference: data integration in dynamic models-a review

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

BioMart--biological queries made easy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Herpes simplex virus-mediated expression of Pax3 and MyoD in embryoid bodies results in lineage-Related alterations in gene expression profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Novel definition files for human GeneChips based on GeneAnnot

14 July 2018

1 reference

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How to infer gene networks from expression profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

BMP-2-enhanced chondrogenesis involves p38 MAPK-mediated down-regulation of Wnt-7a pathway

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Constructing and analyzing a large-scale gene-to-gene regulatory network--lasso-constrained inference and biological validation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Automatic pathway building in biological association networks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Inference of gene regulatory networks and compound mode of action from time course gene expression profiles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Modeling and simulation of genetic regulatory systems: a literature review

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

SOX9 enhances aggrecan gene promoter/enhancer activity and is up-regulated by retinoic acid in a cartilage-derived cell line, TC6.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Coarse-grained reverse engineering of genetic regulatory networks.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Metabolic stability and epigenesis in randomly constructed genetic nets

14 July 2018

1 reference

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Inferring gene regulatory networks from multiple microarray datasets.

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-7-1

RSAT 2011: regulatory sequence analysis tools.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Modeling regulatory networks with weight matrices

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

Linear modeling of mRNA expression levels during CNS development and injury.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3605253

26 November 2018

Identifiers

DOI

10.1186/1752-0509-7-1

1 reference

journals/bmcsb/WeberHVGZD13

16 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 November 2017

PubMed publication ID

23280066

1 reference