Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript (Q30574550)

25 June 2017

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript (English)

1 reference

25 June 2017

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1 reference

Matteo Benelli

1

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Marco Severgnini

object named as

Marco Severgnini

4

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Alberto Magi

object named as

Alberto Magi

6

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author name string

Chiara Pescucci

2

1 reference

25 June 2017

Giuseppina Marseglia

3

1 reference

25 June 2017

Francesca Torricelli

5

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25 June 2017

language of work or name

English

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publication date

23 October 2012

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25 June 2017

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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25 June 2017

28

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25 June 2017

24

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25 June 2017

3232-3239

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Integrative analysis of the melanoma transcriptome

25 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

ChimeraScan: a tool for identifying chimeric transcription in sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Statistical inferences for isoform expression in RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

BLAT—The BLAST-Like Alignment Tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Transcriptome sequencing to detect gene fusions in cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

The impact of translocations and gene fusions on cancer causation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

De novo assembly and analysis of RNA-seq data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Comparative analysis of algorithms for next-generation sequencing read alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

genenames.org: the HGNC resources in 2011.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

RNA-seq reveals novel transcriptome of genes and their isoforms in human pulmonary microvascular endothelial cells treated with thrombin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS617

10.1093/BIOINFORMATICS/BTS617

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/BenelliPMSTM12

25 June 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference