Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs (Q30537797)

15 August 2017

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs (English)

1 reference

15 August 2017

5

1 reference

23 June 2017

Luca Ferretti

3

0 references

Sebastian E Ramos-Onsins

object named as

Sebastian E Ramos-Onsins

9

0 references

Miguel Perez-Enciso

object named as

Miguel Pérez-Enciso

10

0 references

Anna Esteve-Codina

1

object named as

Anna Esteve-Codina

1 reference

15 August 2017

Yogesh Paudel

2

1 reference

15 August 2017

Emanuele Raineri

4

1 reference

15 August 2017

Luis Silió

6

1 reference

15 August 2017

María C Rodríguez

7

1 reference

15 August 2017

Martein A M Groenen

8

1 reference

15 August 2017

language of work or name

English

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publication date

5 March 2013

1 reference

15 August 2017

1 reference

15 August 2017

14

1 reference

15 August 2017

148

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-148

15 August 2017

0 references

cites work

Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape

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Analyses of pig genomes provide insight into porcine demography and evolution

20 June 2018

1 reference

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SNP calling by sequencing pooled samples

20 June 2018

1 reference

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Copy number variation in the genomes of domestic animals

20 June 2018

1 reference

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Gene structure and expression of serotonin receptor HTR2C in hypothalamic samples from infanticidal and control sows

20 June 2018

1 reference

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ART: a next-generation sequencing read simulator.

20 June 2018

1 reference

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Evolutionary genetic dissection of human interferons

20 June 2018

1 reference

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Sustained utilization of the Iberian pig breed

20 June 2018

1 reference

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Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

20 June 2018

1 reference

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Evolutionary and functional evidence for positive selection at the human CD5 immune receptor gene

20 June 2018

1 reference

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Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.

20 June 2018

1 reference

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Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Genome structural variation discovery and genotyping

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Toward a better understanding of pig behavior and pig welfare

20 June 2018

1 reference

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Diversity of human copy number variation and multicopy genes

20 June 2018

1 reference

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20 June 2018

To pool, or not to pool?

1 reference

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Sequencing and analysis of an Irish human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Signatures of positive selection apparent in a small sample of human exomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

mrsFAST: a cache-oblivious algorithm for short-read mapping.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Evolutionary study of a potential selection target region in the pig

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

The Sequence Alignment/Map format and SAMtools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Fast and accurate short read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Contrasting mode of evolution at a coat color locus in wild and domestic pigs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Overdominance in the human genome and olfactory receptor activity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Genetic resources, genome mapping and evolutionary genomics of the pig (Sus scrofa)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Learning and memory and synaptic plasticity are impaired in a mouse model of Rett syndrome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

X-linked sex-determining region Y box 3 (SOX3) gene mutations are uncommon in men with idiopathic oligoazoospermic infertility

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

The signature of positive selection at randomly chosen loci.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Generating samples under a Wright-Fisher neutral model of genetic variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Hitchhiking under positive Darwinian selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

The origin of the domestic pig: independent domestication and subsequent introgression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Statistical properties of segregating sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

A test of neutral molecular evolution based on nucleotide data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Brain gene expression in relation to fearfulness in female red junglefowl (Gallus gallus).

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-148

Mitochondrial DNA sequence variation and phylogenetic relationships among Iberian pigs and other domestic and wild pig populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-148

Characterization of the porcine acyl-CoA synthetase long-chain 4 gene and its association with growth and meat quality traits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-148

A screen for immunity genes evolving under positive selection in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-148

Worldwide genetic relationships of pigs as inferred from X chromosome SNPs.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Recombination rates across porcine autosomes inferred from high-density linkage maps.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3601988

Positive selection in the evolution of mammalian interleukin-2 genes

26 November 2018

1 reference

12 December 2020

Animal models got you puzzled?: think pig

1 reference

12 December 2020

Fast evolution of interleukin-2 in mammals and positive selection in ruminants

1 reference

12 December 2020

Evaluation of the porcine ACSL4 gene as a candidate gene for meat quality traits in pigs

1 reference

12 December 2020

The development of porcine models of obesity and the metabolic syndrome

1 reference

12 December 2020

Gamma chain receptor interleukins: evidence for positive selection driving the evolution of cell-to-cell communicators in the mammalian immune system

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-148

1 reference

Dimensions Publication ID

15 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-148

1 reference

15 August 2017

1 reference