Increased power for the analysis of label-free LC-MS/MS proteomics data by combining spectral counts and peptide peak attributes (Q30500483)

19 October 2017

Increased power for the analysis of label-free LC-MS/MS proteomics data by combining spectral counts and peptide peak attributes (English)

1 reference

19 October 2017

Lee Dicker

1

1 reference

PMCID

3101957

19 October 2017

Xihong Lin

series ordinal

2

1 reference

PMCID

3101957

19 October 2017

Alexander R Ivanov

series ordinal

3

1 reference

19 October 2017

7 September 2010

1 reference

Molecular & Cellular Proteomics

19 October 2017

1 reference

19 October 2017

9

1 reference

19 October 2017

12

1 reference

19 October 2017

2704-2718

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

19 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Peptide sequence confidence in accurate mass and time analysis and its use in complex proteomics experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Tissue fractionation by hydrostatic pressure cycling technology: the unified sample preparation technique for systems biology studies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Significance analysis of spectral count data in label-free shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

DAnTE: a statistical tool for quantitative analysis of -omics data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

The biological impact of mass-spectrometry-based proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

A platform for accurate mass and time analyses of mass spectrometry data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Detecting differential and correlated protein expression in label-free shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

PEPPeR, a platform for experimental proteomic pattern recognition.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Mass spectrometry and protein analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Processing methods for differential analysis of LC/MS profile data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

A common open representation of mass spectrometry data and its application to proteomics research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Rapid identification of proteins by peptide-mass fingerprinting

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Mass spectrometry-based proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Missing value estimation methods for DNA microarrays

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101957

Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

A model for measurement error for gene expression arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

An analysis of variance test for normality (complete samples)

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

A Tutorial on MM Algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.002774

21 January 2018

Identifiers

DOI

10.1074/MCP.M110.002774

1 reference

19 October 2017

1 reference

19 October 2017

1 reference

PMCID

3101957