Atomic detail of chemical transformation at the transition state of an enzymatic reaction (Q30484354)

17 August 2017

Atomic detail of chemical transformation at the transition state of an enzymatic reaction (English)

1 reference

17 August 2017

3

Vern L Schramm

1 reference

17 August 2017

Suwipa Saen-Oon

1

1 reference

17 August 2017

Sara Quaytman-Machleder

series ordinal

2

1 reference

17 August 2017

Steven D Schwartz

series ordinal

4

1 reference

17 August 2017

language of work or name

English

0 references

publication date

22 October 2008

1 reference

Proceedings of the National Academy of Sciences of the United States of America

17 August 2017

1 reference

17 August 2017

105

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17 August 2017

43

1 reference

17 August 2017

16543-16548

1 reference

Remote mutations and active site dynamics correlate with catalytic properties of purine nucleoside phosphorylase

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Intrinsic motions along an enzymatic reaction trajectory

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Reaction coordinate of an enzymatic reaction revealed by transition path sampling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Neighboring Group Participation in the Transition State of Human Purine Nucleoside Phosphorylase †

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Computational and theoretical methods to explore the relation between enzyme dynamics and catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Relating protein motion to catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Enzymatic transition states and transition state analogues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Enzymatic transition states: thermodynamics, dynamics and analogue design

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Enzyme dynamics during catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Atomic motion in enzymatic reaction coordinates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Transition state structure of purine nucleoside phosphorylase and principles of atomic motion in enzymatic catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Reaction coordinates of biomolecular isomerization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

How enzyme dynamics helps catalyze a reaction in atomic detail: a transition path sampling study

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0808413105

Promoting vibrations in human purine nucleoside phosphorylase. A molecular dynamics and hybrid quantum mechanical/molecular mechanical study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0808413105

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0808413105

A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0808413105

Optimization of parameters for semiempirical methods I. Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0808413105

Remote mutations alter transition-state structure of human purine nucleoside phosphorylase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Altered thermodynamics from remote mutations altering human toward bovine purine nucleoside phosphorylase

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

Transition state analysis for human and Plasmodium falciparum purine nucleoside phosphorylases.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575456

A transition path sampling study of the reaction catalyzed by the enzyme chorismate mutase

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18946041

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18946041

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0808413105

1 reference

17 August 2017

0 references

1 reference

17 August 2017

1 reference