Visualizing polynucleotide polymerase machines at work (Q30477785)

2 November 2017

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title

Visualizing polynucleotide polymerase machines at work (English)

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2 November 2017

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Thomas A Steitz

1

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PMCID

1538561

2 November 2017

language of work or name

English

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publication date

1 August 2006

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2 November 2017

1 reference

2 November 2017

25

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2 November 2017

15

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2 November 2017

3458-3468

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The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition

2 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Probing conformational changes in T7 RNA polymerase during initiation and termination by using engineered disulfide linkages

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Direct observation of base-pair stepping by RNA polymerase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural evidence for a two-metal-ion mechanism of group I intron splicing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Bacterial RNA polymerases: the wholo story

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structure of a T7 RNA polymerase elongation complex at 2.9 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structure of the replicating complex of a pol alpha family DNA polymerase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

T7 RNA polymerase transcription complex: what you see is not what you get.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

A ratchet-like inter-subunit reorganization of the ribosome during translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structure of a transcribing T7 RNA polymerase initiation complex

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

DNA polymerases: structural diversity and common mechanisms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

A mechanism for all polymerases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Protein-primed DNA replication: a transition between two modes of priming by a unique DNA polymerase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

A model for the mechanism of polymerase translocation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Hydrophobic bonding and accessible surface area in proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Protein-priming of DNA replication

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538561

Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC.

14 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601211

21 January 2018

Change and continuity

1 reference

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601211

The structural mechanism of translocation and helicase activity in T7 RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601211

T7 RNA polymerase elongation complex structure and movement

21 January 2018

1 reference

12 December 2020

Common structural features of nucleic acid polymerases

1 reference

12 December 2020

Topological and conformational analysis of the initiation and elongation complex of t7 RNA polymerase suggests a new twist

1 reference

12 December 2020

Interactions of a proteolytically nicked RNA polymerase of bacteriophage T7 with its promoter

1 reference

12 December 2020

The mechanism of action of T7 DNA polymerase

1 reference

12 December 2020

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

12 December 2020

Unravelling the mechanism of RNA-polymerase forward motion by using mechanical force

1 reference

12 December 2020

Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet

1 reference

12 December 2020

The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework

1 reference

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601211

7 January 2021

inferred from DOI database lookup

Processivity of proteolytically modified forms of T7 RNA polymerase

1 reference

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601211

7 January 2021

inferred from DOI database lookup

Substrate recognition and induced DNA deformation by transposase at the target-capture stage of Tn10 transposition

1 reference

https://api.crossref.org/works/10.1038%2FSJ.EMBOJ.7601211

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/SJ.EMBOJ.7601211

1 reference

2 November 2017

1 reference

2 November 2017

1 reference

PMCID

1538561