Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences (Q30477703)

15 October 2017

Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences (English)

1 reference

15 October 2017

1 reference

George E Liu

1

1 reference

15 October 2017

Lakshmi K Matukumalli

2

1 reference

15 October 2017

Tad S Sonstegard

3

1 reference

15 October 2017

Larry L Shade

4

1 reference

15 October 2017

Curtis P Van Tassell

5

1 reference

15 October 2017

language of work or name

English

0 references

publication date

7 June 2006

1 reference

15 October 2017

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15 October 2017

7

1 reference

15 October 2017

140

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Creative Commons Attribution 2.0 Generic

15 October 2017

start time

7 June 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-7-140

0 references

cites work

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A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution

20 June 2018

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20 June 2018

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20 June 2018

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Manipulating multiple sequence alignments via MaM and WebMaM

20 June 2018

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A genomics approach to the detection of positive selection in cattle: adaptive evolution of the T-cell and natural killer cell-surface protein CD2.

20 June 2018

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An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing

20 June 2018

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20 June 2018

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Mammalian phylogenomics comes of age

20 June 2018

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The ENCODE (ENCyclopedia Of DNA Elements) Project

20 June 2018

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Finishing the euchromatic sequence of the human genome

20 June 2018

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A comprehensive genetic map of the cattle genome based on 3802 microsatellites

20 June 2018

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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

20 June 2018

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A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates

20 June 2018

1 reference

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Aligning multiple genomic sequences with the threaded blockset aligner

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes

20 June 2018

1 reference

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Genome sequence of the Brown Norway rat yields insights into mammalian evolution

20 June 2018

1 reference

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Mapping of the GATA4, NEIL2, FDFT1 genes and CTSB-associated microsatellites to the centromeric region of BTA8.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Mobile elements and mammalian genome evolution.

20 June 2018

1 reference

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Comparative analyses of multi-species sequences from targeted genomic regions

20 June 2018

1 reference

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Identification of two new members of the CSMD gene family

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

A cattle-human comparative map built with cattle BAC-ends and human genome sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Glocal alignment: finding rearrangements during alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Majority of divergence between closely related DNA samples is due to indels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Placental mammal diversification and the Cretaceous-Tertiary boundary

20 June 2018

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Human-mouse alignments with BLASTZ

20 June 2018

1 reference

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Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

20 June 2018

1 reference

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Initial sequencing and comparative analysis of the mouse genome

20 June 2018

1 reference

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The origin and evolution of model organisms

20 June 2018

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20 June 2018

Mammalian retroelements.

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Deterministic mutation rate variation in the human genome

20 June 2018

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Recent segmental duplications in the human genome

20 June 2018

1 reference

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Genomewide comparison of DNA sequences between humans and chimpanzees

20 June 2018

1 reference

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Gene conversion homogenizes the CMT1A paralogous repeats

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Mutation rates in mammalian genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Misunderstandings about isochores. Part 1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Positive selection of a gene family during the emergence of humans and African apes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Initial sequencing and analysis of the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Parallel adaptive radiations in two major clades of placental mammals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

The Sequence of the Human Genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Interspersed repeats and other mementos of transposable elements in mammalian genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

PAML: a program package for phylogenetic analysis by maximum likelihood

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Simple methods for testing the molecular evolutionary clock hypothesis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Molecules as documents of evolutionary history

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Interlocus variation of genetic distance and the neutral mutation theory

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Detecting putative orthologs.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Investigation of candidate genes for meat quality in dry-cured ham production: the porcine cathepsin B (CTSB) and cystatin B (CSTB) genes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Covariation of GC content and the silent site substitution rate in rodents: implications for methodology and for the evolution of isochores.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1525190

Confirmation of the human cathepsin B gene (CTSB) assignment to chromosome 8

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16759380

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Localization of the squalene synthase gene (FDFT1) to human chromosome 8p22-p23.1.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16759380

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rare variant alleles in the light of the neutral theory

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16759380

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-7-140

1 reference

Dimensions Publication ID

15 October 2017

0 references

1 reference

15 October 2017

1 reference